Settings refactoring

[ksaito7]

This PR refactors setting stuff in order to enable checkpoint manager to recover setting values. In addition, added some convenient functions.

- Fix Points of SettingsManager

1. Change All set functions to non-static, and move all set/get functions to public.
2. Add txn argument into set functions in order that a caller of set functions can manage a necessary transaction by itself.
3. Add set_default argument into set functions. If this flag argument is true, then the default value is updated in addition to updating the setting value.
4. Add Reset public function to reset the setting value to default value.
5. Add UpdateSettingListFromCatalog() public function to update setting values in the manager from catalog for checkpoints.
6. Add/Modify two catalog management private functions: InsertCatalog(), UpdateCatalog().

- Fix Points of SettingsCatalog

1. Add SettingsCatalogEntry class to acquire all setting information from catalog
2. Add GetSettingsCatalogEntry() and GetSettingsCatalogEntries() functions.
   *These function names are temporary. The permanent names depend on discussion in PR Catalog code cleanup #1414.
3. Delete other get functions.
4. Add UpdateSettingValue() function to update a setting value and a default value.

- Related Issues

1. Issues Setting issues #1424

[coveralls]

Coverage decreased (-0.1%) to 76.39% when pulling ebc71ad on ksaito7:settings_refactor into 898219f on cmu-db:master.

[ksaito7]

This last commit isn't related to this PR directly, but I did it because a part of index names of constraints were weird. (related to #1415 we worked for last time)