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Release pyMaBoSS v0.8.6 #51

Merged
merged 18 commits into from
Dec 6, 2023
Merged

Release pyMaBoSS v0.8.6 #51

merged 18 commits into from
Dec 6, 2023

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vincent-noel
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  • Fix nodes format limitations in initial states
  • Fix tracking of mutations, avoiding multiple declarations of $nb_mutants
  • Fix simulation of model loaded with cMaBoSS
  • Added support for python 3.12
  • Improved documentation
  • Added long description for PyPi

@vincent-noel
Forcing nodes to be a list in get_nodes_stepwise_probability_distribu…
12aabdc 
…tion
@vincent-noel
Istate proba can now contain underscore
cf6ff3b
@vincent-noel
Mutation copy is now done via the Simulation constructor (thus includ…
b5b2ff8 
…ed in the model check)
@vincent-noel
Correctly replacing the list of nodes when recomputing the nodes prob…
19c307f 
…trajs
@vincent-noel
Now detecting mutations at import, and writing only nb_mutable once
bd574cc
@vincent-noel
Fix cmaboss results import
8dcf29c
@vincent-noel
Added simple objects to get maxtime and list of nodes in cmabosssimul…
6896c47 
…ation
@vincent-noel
Fix compatibility with pandas 2.0 in cmaboss for upmaboss
9cc4cb9
@vincent-noel
Added a test for loading a maboss model with cmaboss within a upmabos…
3975588 
…s simulation
@vincent-noel
Tagged v0.8.6, bumped cmaboss dependency to v1.0.0b19
768299a
@vincent-noel
Removed tests for python 3.7, added for python 3.11
807b64d
@vincent-noel
Models in ensemble now be in reproducible order
99bfb88
@vincent-noel
Updated pyMaBoSS documentation, added intro and install instructions,…
c0be02c 
… added Arnau's prostate example notebook
@vincent-noel
Added tests for python 3.12
b98275f
@vincent-noel
Added long description, updated authors list and contact email
1e73128
@vincent-noel
Updated github actions/checkout
6907b64
@vincent-noel
Added installation instructions in the long description
f863356
@vincent-noel
Improved installation instructions
4e77b0e
@vincent-noel vincent-noel merged commit 026d2a9 into colomoto:master Dec 6, 2023
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@vincent-noel