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Change import for bioconda #199

Change import for bioconda

Change import for bioconda #199

Workflow file for this run

name: Publish to PyPI and GitHub release
on:
push:
tags:
- 'v*'
jobs:
python-package:
runs-on: ubuntu-latest
permissions:
id-token: write
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install build flake8
- name: Check for syntax errors
run: |
flake8 ./deeplc --count --select=E9,F63,F7,F82 --show-source --statistics
- name: Build package
run: |
python -m build . --sdist --wheel
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
skip-existing: true
- name: Upload compiled wheels
uses: actions/upload-artifact@v4
with:
name: python-wheels
path: dist/*.whl
windows-installer:
runs-on: windows-latest
needs: python-package
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.11'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install .[gui] pyinstaller
- name: Install Inno Setup
uses: crazy-max/ghaction-chocolatey@v3
with:
args: install innosetup -y --allow-unofficial --force
- name: Run pyinstaller
run: pyinstaller ./deeplc_pyinstaller.spec --clean --noconfirm
- name: Test built DeepLC exe
run: dist/deeplc/deeplc.exe --ignore-gooey --help
- name: Run Inno Setup
run: ISCC.exe ./deeplc_innosetup.iss /DAppVersion=${{ github.ref_name }}
- name: Upload installer
uses: actions/upload-artifact@v4
with:
name: windows-installer
path: dist/*.exe
git-release:
runs-on: ubuntu-latest
needs: [python-package, windows-installer]
steps:
- uses: actions/checkout@v4
- name: Download installer
uses: actions/download-artifact@v4
with:
path: dist
- name: Create GitHub Release
uses: docker://antonyurchenko/git-release:v6
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
DRAFT_RELEASE: "false"
PRE_RELEASE: "false"
CHANGELOG_FILE: "CHANGELOG.md"
with:
args: |
dist/**/*.exe
dist/**/*.whl
build-streamlit-image:
runs-on: ubuntu-latest
needs: python-package
steps:
- uses: actions/checkout@v4
- id: latest_release
uses: pozetroninc/github-action-get-latest-release@master
with:
owner: compomics
repo: DeepLC
- name: Login to GitHub Container Registry
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.repository_owner }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Build and push to ghcr.io
uses: docker/build-push-action@v5
with:
context: streamlit
push: true
tags: |
ghcr.io/compomics/deeplc-streamlit:${{ steps.latest_release.outputs.release }}
ghcr.io/compomics/deeplc-streamlit:latest