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v3.13.0

v3.13.0 #46

name: Build and publish to PyPI
on:
release:
types: [created]
jobs:
build-sdist:
name: Build source distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
lfs: 'true'
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.10'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install setuptools oldest-supported-numpy cython flake8
- name: Check for syntax errors
run: |
flake8 ./ms2pip ./fasta2speclib --count --select=E9,F63,F7,F82 --show-source --statistics
- name: Build sdist
run: python setup.py sdist
- uses: actions/upload-artifact@v2
with:
name: dist
path: dist/*.tar.gz
build-wheels:
name: Build wheels on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
steps:
- uses: actions/checkout@v2
with:
lfs: 'true'
- uses: actions/setup-python@v2
name: Install Python
with:
python-version: '3.10'
- name: Check for syntax errors
run: |
python -m pip install flake8
flake8 ./ms2pip ./fasta2speclib --count --select=E9,F63,F7,F82 --show-source --statistics
- name: Install cibuildwheel
run: python -m pip install cibuildwheel==2.3.1
- name: Build wheels
run: python -m cibuildwheel --output-dir dist
env:
# No XGBoost wheels for 32bit Windows
CIBW_BUILD: "cp3*-manylinux_x86_64 cp3*-win_amd64 cp3*-macosx_x86_64"
CIBW_SKIP: "cp36-* cp39-macosx_x86_64" # EOL & build issue #216
CIBW_BEFORE_ALL_MACOS: "brew install libomp"
CIBW_MANYLINUX_X86_64_IMAGE: "manylinux2014"
CIBW_TEST_REQUIRES: "pytest"
CIBW_TEST_COMMAND: "pytest {project}/tests"
- uses: actions/upload-artifact@v2
with:
name: dist
path: dist/ms2pip-*.whl
publish-to-pypi:
needs: [build-sdist, build-wheels]
runs-on: ubuntu-latest
environment:
name: pypi
url: https://pypi.org/p/ms2pip
permissions:
id-token: write
steps:
- uses: actions/download-artifact@v2
with:
name: dist
path: dist
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1