Skip to content

computational-metabolomics/django-mogi

Repository files navigation

django-mogi

Build Status (Travis) Py versions

Metabolomics organisation with Galaxy and ISA

Further documentation available on ReadTheDocs

Quick start

  1. Add "mogi" and django application dependencies to your INSTALLED_APPS setting like this (mogi should come before galaxy and gfiles):

    INSTALLED_APPS = [
        ...
        'mogi',
        'galaxy',
        'gfiles',
    
        'django_tables2',
        'django_tables2_column_shifter',
        'django_filters',
        'bootstrap3',
        'django_sb_admin',
        'dal',
        'dal_select2',
    ]
    
  2. Include the URLconf in your project urls.py like this:

    url(r'^', include('gfiles.urls')),
    url('mogi/', include('mogi.urls')),
    url('mbrowse/', include('mbrowse.urls')),
    url('misa/', include('misa.urls')),
    url('galaxy/', include('galaxy.urls')),
    
  3. Run python manage.py migrate to create the mogi models.

  4. Start the development server and visit http://127.0.0.1:8000/

  5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/

  6. General overview http://127.0.0.1:8000

  7. Create, edit, view and export ISA projects http://127.0.0.1:8000/misa/ilist/

  8. Upload to Galaxy, run Galaxy workflows and view Galaxy histories http://127.0.0.1:8000/misa/ilist/

  9. Browse, view and search metabolomic datasets http://127.0.0.1:8000/mbrowse/general_summary/

About

Metabolomics Organisation with Galaxy and ISA

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published