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DeepVirFinder Evaluation

ECE 381V Term Project

Contributors: Corey Karnei and Jackson Lightfoot

This repository contributes python notebook scripts for sampling genomes from .fasta files and evaluating prediction scores outputted by DeepVirFinder. It also includes a shell script to run DeepVirFinder on folders containing .fasta files. Lastly, it includes figures and results from our own experiments.

The original repository can be found here.

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Identifying viruses from metagenomic data by deep learning

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  • Jupyter Notebook 90.6%
  • Python 8.9%
  • Shell 0.5%