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@coskunlab

Single Cell Biotechnology Laboratory @GATech

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  1. scSpaMet scSpaMet Public

    Jupyter Notebook 8 1

  2. SpatialViz SpatialViz Public

    Code for "Spatially visualized single-cell pathology of highly multiplexed protein profiles in health and disease"

    Jupyter Notebook 4 2

  3. SpatialVizScore SpatialVizScore Public

    Jupyter Notebook 3 1

  4. Ion-Beam-Tomography Ion-Beam-Tomography Public

    Code for "Nanoscopic subcellular imaging enabled by Ion Beam Tomography"

    Jupyter Notebook 1 2

  5. spaGNN spaGNN Public

    Code for "Subcellular spatially resolved gene neighborhood network"

    Jupyter Notebook 1

  6. Spatially-resolved-3D-metabolomic-profiling Spatially-resolved-3D-metabolomic-profiling Public

    The code for the paper “Spatially resolved 3D metabolomic profiling in tissues”.

    Jupyter Notebook

Repositories

Showing 10 of 19 repositories
  • Snowflake Public
    coskunlab/Snowflake’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 6, 2024
  • GSR-PPI Public

    Graph-based spatial proximity of super-resolved protein-protein interactions predict cancer drug responses in single cells

    coskunlab/GSR-PPI’s past year of commit activity
    0 0 0 0 Updated Aug 12, 2024
  • 3D-co-culture-of-murine-T-cells-and-lung-cancer-cells Public
    coskunlab/3D-co-culture-of-murine-T-cells-and-lung-cancer-cells’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 17, 2024
  • 3D-spaGNN-E Public

    Code for manuscript titled: Graph-based 3D spatial gene neighborhood networks in gel-embedded single cells

    coskunlab/3D-spaGNN-E’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 11, 2024
  • iseqPLA Public
    coskunlab/iseqPLA’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 9, 2024
  • pSigOmics Public

    NFkB pSigOmics

    coskunlab/pSigOmics’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 26, 2024
  • M.E.D.V.I.S-Algorithm Public

    This repository houses all of the scripts and files used to run and test the M.E.D.V.I.S Alogirthm

    coskunlab/M.E.D.V.I.S-Algorithm’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 27, 2024
  • scSpaMet Public
    coskunlab/scSpaMet’s past year of commit activity
    Jupyter Notebook 8 1 0 0 Updated Sep 29, 2023
  • SpatialVizPheno Public

    Spatial Immunophenotyping using Multiplexed Imaging of Immune Follicles in Secondary Lymphoid Tissues

    coskunlab/SpatialVizPheno’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 31, 2023
  • spPPI-GCN Public
    coskunlab/spPPI-GCN’s past year of commit activity
    0 0 0 0 Updated Jul 8, 2023
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