The https://github.com/covid19-hg GitHub organization is used for repositories for COVID-19 HGI data analysis.
If you're writing scripts or pipelines for COVID-19 HGI analysis, repository additions and pull requests to existing repositories are highly encouraged. This way we can as a community share and develop reproducible analysis code effectively.
If you want to contribute, please contact jkarjala at broadinstitute.org e-mail or ICDA Slack. The repositories are publicly available but for pushing to the repositories or adding new repositories we need to add you as a member.
- https://github.com/covid19-hg/META_ANALYSIS
This repository is for GWAS meta-analysis and summary stats munging code and pipeline.
Creation of Docker images from tools is encouraged as that provides an easy and reproducible way to run them without any installation troubles.
There is a Docker Hub organization for COVID-19 HGI. Contact jkarjala at broadinstitute.org to get upload access for your images.
- Meta-analysis docker image for meta-analysis
- SAIGE docker image for running GWAS with SAIGE and plotting qq and Manhattan plots