[ENH] add basic QC

[Remi-Gau]

No description provided.

[sourcery-ai]

Sourcery Code Quality Report

✅  Merging this PR will increase code quality in the affected files by 2.03%.

Quality metrics	Before	After	Change
Complexity	3.50 ⭐	3.18 ⭐	-0.32 👍
Method Length	74.60 🙂	72.40 🙂	-2.20 👍
Working memory	7.02 🙂	6.75 🙂	-0.27 👍
Quality	71.61% 🙂	73.64% 🙂	2.03% 👍

Other metrics	Before	After	Change
Lines	1029	1039	10

Changed files	Quality Before	Quality After	Quality Change
bidsmreye/generalize.py	64.54% 🙂	66.72% 🙂	2.18% 👍
bidsmreye/prepare_data.py	64.46% 🙂	68.35% 🙂	3.89% 👍
bidsmreye/utils.py	75.13% ⭐	76.08% ⭐	0.95% 👍
tests/test_generalize.py	90.60% ⭐	85.83% ⭐	-4.77% 👎

Here are some functions in these files that still need a tune-up:

File	Function	Complexity	Length	Working Memory	Quality	Recommendation
bidsmreye/generalize.py	process_subject	4 ⭐	216 ⛔	12 😞	49.66% 😞	Try splitting into smaller methods. Extract out complex expressions
bidsmreye/utils.py	Config.check_argument	11 🙂	177 😞	9 🙂	51.74% 🙂	Try splitting into smaller methods
bidsmreye/utils.py	Config.__attrs_post_init__	9 🙂	214 ⛔	7 🙂	55.23% 🙂	Try splitting into smaller methods
bidsmreye/utils.py	check_layout	9 🙂	148 😞	9 🙂	56.40% 🙂	Try splitting into smaller methods
bidsmreye/prepare_data.py	combine_data_with_empty_labels	0 ⭐	165 😞	9 🙂	63.46% 🙂	Try splitting into smaller methods

Legend and Explanation

The emojis denote the absolute quality of the code:

• ⭐ excellent
• 🙂 good
• 😞 poor
• ⛔ very poor

The 👍 and 👎 indicate whether the quality has improved or gotten worse with this pull request.

---

Please see our documentation here for details on how these metrics are calculated.

We are actively working on this report - lots more documentation and extra metrics to come!

Help us improve this quality report!

[codecov]

Codecov Report

Attention: Patch coverage is 88.08511% with 28 lines in your changes missing coverage. Please review.

Project coverage is 75.00%. Comparing base (001c90c) to head (cce6495).
Report is 169 commits behind head on main.

Files with missing lines	Patch %	Lines
bidsmreye/utils.py	57.14%	8 Missing and 1 partial ⚠️
bidsmreye/prepare_data.py	42.85%	8 Missing ⚠️
bidsmreye/quality_control.py	94.21%	3 Missing and 4 partials ⚠️
bidsmreye/generalize.py	75.00%	3 Missing ⚠️
bidsmreye/visualize.py	98.50%	0 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #102      +/-   ##
==========================================
+ Coverage   65.45%   75.00%   +9.54%     
==========================================
  Files           7        9       +2     
  Lines         576      776     +200     
  Branches       88      104      +16     
==========================================
+ Hits          377      582     +205     
+ Misses        167      151      -16     
- Partials       32       43      +11     

Flag	Coverage Δ
tests	74.87% <87.65%> (+9.41%)	⬆️

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