Allow Zarr compression to be set for intermediate files #1346

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Run time

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Job	Run time
test (ubuntu-latest, 3.9)	7m 55s
test (macos-12, 3.9)	10m 18s
test (windows-latest, 3.9)	8m 57s
test (ubuntu-latest, 3.12)	7m 25s
	34m 35s