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Include aggregation in recipe step #9

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gwaybio opened this issue Dec 14, 2020 · 1 comment
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Include aggregation in recipe step #9

gwaybio opened this issue Dec 14, 2020 · 1 comment
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enhancement New feature or request

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@gwaybio
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gwaybio commented Dec 14, 2020

Currently in the JUMP recipe, the first step in the image-based profiling pipeline (aggregation) is being performed by cytominer, instead of pycytominer.

To streamline the recipe, the aggregation step should be ported to pycytominer.

Once cytomining/pycytominer#111 is merged, this step will be simple to port
@gwaybio gwaybio added the enhancement New feature or request label Dec 14, 2020
@gwaybio gwaybio mentioned this issue Dec 14, 2020
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niranjchandrasekaran added a commit that referenced this issue Jul 30, 2021
@niranjchandrasekaran
Merge pull request #9 from jump-cellpainting/plate_name
4c14700 
Read all folders within a batch as plates
@niranjchandrasekaran
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