Change variance_threshold default to 0.01 (#286)

* Change variance_threshold default to 0.01 * Update feature_select to match variance_threshold default
cytomining · Jun 8, 2023 · 77d93a3 · 77d93a3
1 parent 182745a
commit 77d93a3
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pycytominer/feature_select.py b/pycytominer/feature_select.py
@@ -27,7 +27,7 @@ def feature_select(
     corr_threshold=0.9,
     corr_method="pearson",
     freq_cut=0.05,
-    unique_cut=0.1,
+    unique_cut=0.01,
     compression_options=None,
     float_format=None,
     blocklist_file=None,

diff --git a/pycytominer/operations/variance_threshold.py b/pycytominer/operations/variance_threshold.py
@@ -9,7 +9,7 @@
 
 
 def variance_threshold(
-    population_df, features="infer", samples="all", freq_cut=0.05, unique_cut=0.1
+    population_df, features="infer", samples="all", freq_cut=0.05, unique_cut=0.01
 ):
     """Exclude features that have low variance (low information content)