bump: version 0.2.0 → 1.0.0

CHANGELOG.md

@@ -0,0 +1,51 @@
+## v1.0.0 (2023-10-29)
+
+[Detailed Release Notes](https://github.com/cytomining/pycytominer/releases/tag/v1.0.0)
+
+### BREAKING CHANGE
+
+- functions now use expect None type as argument where they previously expected a "none" string
+- **drop_outliers**:: change default outlier threshold to 500
+- **variance_threshold** change variance_threshold default to 0.01
+
+### Feat
+
+- add parquet support for all i/o functions
+- **annotate**: add function to convert SQLite to pandas DataFrame and merge additional metadata
+- **build**: switch to poetry for dependency management and builds
+- **cells**: Enable custom image table name for SQLite queries in cells.py
+- **deepprofiler**: add single cell output and normalization
+- **dev**: standardized dev process and workflows (See [CONTRIBUTING.md](CONTRIBUTING.md)):
+  - add vscode devcontainer and codespaces config
+  - add conventional commit standards and commitizen cli
+  - add pre-commit hooks for black, prettier, actionlint
+- **docs**: Add detailed single-cell profiling [walkthrough](https://pycytominer.readthedocs.io/en/latest/walkthroughs/single_cell_usage.html)
+- **utils**: cell_locations script to append X,Y locations to LoadData
+
+### Fix
+
+- **annotate**: add informative merge suffixes to platemap and external_metadata
+- **annotate**: add check before dropping well columns
+- **build**: remove python 3.7 support
+- **correlation**: Use numpy to calculate pearson corr of non NaN matrices
+- **load_profiles**: now works with PurePath types
+
+## v0.2.0 (2022-06-17)
+
+[Detailed Release Notes](https://github.com/cytomining/pycytominer/releases/tag/v0.2.0)
+
+### Feat
+
+- **collate**: support CellProfiler analyses directly from CellProfiler output files
+
+## v0.1.5 (2022-06-17)
+
+[Detailed Release Notes](https://github.com/cytomining/pycytominer/releases/tag/v0.1.5)
+
+### Fix
+
+- **merge_single_cells** - improve memory performance
+
+## v0.1 (2022-02-08)
+
+[Detailed Release Notes](https://github.com/cytomining/pycytominer/releases/tag/v0.1)

CITATION.cff

@@ -67,6 +67,6 @@ authors:
     orcid: https://orcid.org/0000-0002-0503-9348
 title: "Reproducible processing of image-based profiling representations with Pycytominer"
 # This version is updated using `cz bump` command
-version: "0.2.0"
+version: "1.0.0"
 license: BSD 3-Clause License
 repository-code: "https://github.com/cytomining/pycytominer"

pyproject.toml

@@ -96,7 +96,7 @@ files = ["pycytominer/__about__.py"]
 
 [tool.commitizen]
 # This version is used for changelog tracking and is updated using `cz bump`
-version = "0.2.0"
+version = "1.0.0"
 name = "cz_conventional_commits"
 tag_format = "v$version"
 version_scheme = "pep440"