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Adding single cell module #111

Merged
merged 16 commits into from
Dec 16, 2020
Merged

Adding single cell module #111

merged 16 commits into from
Dec 16, 2020

Commits on Sep 25, 2020

  1. move AggregateProfiles class to SingleCell class

    @gwaybio
    gwaybio committed Sep 25, 2020
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Commits on Oct 9, 2020

  1. black on test

    @gwaybio
    gwaybio committed Oct 9, 2020
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Commits on Dec 10, 2020

  1. merge upstream

    @gwaybio
    gwaybio committed Dec 10, 2020
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  2. add cells module

    @gwaybio
    gwaybio committed Dec 10, 2020
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Commits on Dec 14, 2020

  1. add sphinx comments and prep for file input modularity

    @gwaybio
    gwaybio committed Dec 14, 2020
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  2. update tests for updated cells function args

    @gwaybio
    gwaybio committed Dec 14, 2020
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  3. add function to merge single cells given linking columns

    @gwaybio
    gwaybio committed Dec 14, 2020
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  4. add get_default_compartments() function

    @gwaybio
    gwaybio committed Dec 14, 2020
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  5. add test to load compartment

    @gwaybio
    gwaybio committed Dec 14, 2020
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  6. add file to test single cell ingestion processing

    @gwaybio
    gwaybio committed Dec 14, 2020
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Commits on Dec 15, 2020

  1. add single cell ingest util file

    @gwaybio
    gwaybio committed Dec 15, 2020
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  2. one line import

    @gwaybio
    gwaybio committed Dec 15, 2020
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  3. closes cytomining#110

    @gwaybio
    gwaybio committed Dec 15, 2020
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  4. fix column name issue when merging - do not consider linking columns … 

    …as morphology features
    @gwaybio
    gwaybio committed Dec 15, 2020
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  5. enable infer_cp_feature with string 

    and abstract out function
    @gwaybio
    gwaybio committed Dec 15, 2020
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  6. remove features init argument 

    enable aggregation_args and no longer hardcoded aggregation
    @gwaybio
    gwaybio committed Dec 15, 2020
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