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Implementing DeepProfiler single cell output and normalization #210

Merged
merged 22 commits into from
Jun 28, 2022
Merged

Implementing DeepProfiler single cell output and normalization #210

merged 22 commits into from
Jun 28, 2022

Commits on Jun 24, 2022

  1. aggregate with new deepprof format

    @roshankern
    roshankern committed Jun 24, 2022
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  2. deep data separate class

    @roshankern
    roshankern committed Jun 24, 2022
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  3. single cell normalization deep profiler

    @roshankern
    roshankern committed Jun 24, 2022
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  4. update documentation

    @roshankern
    roshankern committed Jun 24, 2022
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  5. newline

    @roshankern
    roshankern committed Jun 24, 2022
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  6. newline

    @roshankern
    roshankern committed Jun 24, 2022
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Commits on Jun 27, 2022

  1. deep profiler unit tests

    @roshankern
    roshankern committed Jun 27, 2022
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  2. load unit tests

    @roshankern
    roshankern committed Jun 27, 2022
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  3. black formatting

    @roshankern
    roshankern committed Jun 27, 2022
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Commits on Jun 28, 2022

  1. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  2. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  3. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  4. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  5. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  6. finish adding get_single_cells()

    @roshankern
    roshankern committed Jun 28, 2022
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  7. update integration tests

    @roshankern
    roshankern committed Jun 28, 2022
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  8. black formatting

    @roshankern
    roshankern committed Jun 28, 2022
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  9. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  10. Update pycytominer/cyto_utils/DeepProfiler_processing.py 

    Co-authored-by: Gregory Way <gregory.way@gmail.com>
    @roshankern @gwaybio
    roshankern and gwaybio authored Jun 28, 2022
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  11. update single_cells logic

    @roshankern
    roshankern committed Jun 28, 2022
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  12. update testing

    @roshankern
    roshankern committed Jun 28, 2022
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  13. black formatting

    @roshankern
    roshankern committed Jun 28, 2022
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