run bash fixed

d3b-center · Jul 14, 2021 · 751785d · 751785d
1 parent 245bc6a
commit 751785d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/analyses/fusion_filtering/run_fusion_merged.sh b/analyses/fusion_filtering/run_fusion_merged.sh
@@ -98,7 +98,7 @@ Rscript 02-fusion-filtering.R --standardFusionFiles $standard_starfusion_file,$s
 
 # Fusion zscore annotation for filtered fusion for the combined RNA expression file
 Rscript 03-Calc-zscore-annotate.R --standardFusionCalls "${scratch_path}/standardFusionExp_QC_expression_filtered_annotated.RDS" \
-                                  --expressionMatrix $polya_expression_file \
+                                  --expressionMatrix $rna_expression_file \
                                   --normalExpressionMatrix $normal_expression_file \
                                   --outputFile "${scratch_path}/standardFusionExp_QC_expression"