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Annotate CNV table with mutation frequencies #52

Merged
merged 13 commits into from
Jul 28, 2021
Merged

Annotate CNV table with mutation frequencies #52

merged 13 commits into from
Jul 28, 2021

Commits on Jul 14, 2021

  1. intial cnv_frequecies module

    @ewafula
    ewafula committed Jul 14, 2021
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Commits on Jul 16, 2021

  1. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies 

    update local cnv-frequencies with remote OpenPedCan
    @ewafula
    ewafula committed Jul 16, 2021
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  2. update for docker compatibility initial cnv-frequecies module

    @ewafula
    ewafula committed Jul 16, 2021
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Commits on Jul 17, 2021

  1. amended primary/relapse tumor frequecies calculation, annotation func… 

    …, and JSONL conversion
    @ewafula
    ewafula committed Jul 17, 2021
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Commits on Jul 20, 2021

  1. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies 

    update from upstream
    @ewafula
    ewafula committed Jul 20, 2021
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  2. run time optimization

    @ewafula
    ewafula committed Jul 20, 2021
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Commits on Jul 21, 2021

  1. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies 

    fix error in 01-cnv-frequencies.py
    @ewafula
    ewafula committed Jul 21, 2021
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  2. fix assigment error in get_annotations func

    @ewafula
    ewafula committed Jul 21, 2021
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Commits on Jul 26, 2021

  1. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies

    @ewafula
    ewafula committed Jul 26, 2021
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  2. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies

    @ewafula
    ewafula committed Jul 26, 2021
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Commits on Jul 27, 2021

  1. integrated annotator for v7 from long-format-table-utils module

    @ewafula
    ewafula committed Jul 27, 2021
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  2. Merge remote-tracking branch 'upstream/dev' into cnv-frequencies

    @ewafula
    ewafula committed Jul 27, 2021
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Commits on Jul 28, 2021

  1. changed to independent specimen files which contain wxs and panel data

    @ewafula
    ewafula committed Jul 28, 2021
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