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Update Dockerfile to install JSON processor jq #53

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merged 1 commit into from
Jul 14, 2021

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@logstar logstar commented Jul 14, 2021

Purpose/implementation Section

What scientific question is your analysis addressing?

Convert JSON format to JSONL format.

What was your approach?

jq --compact-output '.[]' table.json > table.jsonl

More details at #27 (comment)

What GitHub issue does your pull request address?

No GitHub issue. Requested in Slack at https://opentargetspediatrics.slack.com/archives/C021Z53SK98/p1625685209070000.

Reproducibility Checklist

  • The dependencies required to run the code in this pull request have been added to the project Dockerfile.

Install json processor jq for converting JSON format to JSONL format. Related comment: <#27 (comment)>.
@logstar logstar requested a review from kgaonkar6 July 14, 2021 15:35
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Passes docker build check!

@kgaonkar6 kgaonkar6 merged commit 84502bf into dev Jul 14, 2021
@logstar logstar deleted the logstar/update-docker-file branch July 16, 2021 20:25
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2 participants