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  1. Phylogeny-MSA-Transformer Phylogeny-MSA-Transformer Public

    Forked from Bitbol-Lab/Phylogeny-MSA-Transformer

    Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (preprint: https://doi.org/10.1101/2022.03.29.486219)

    Jupyter Notebook

  2. Bitbol-Lab/ProtMamba-ssm Bitbol-Lab/ProtMamba-ssm Public

    ProtMamba: a homology-aware but alignment-free protein state space model

    Jupyter Notebook 49 7

  3. Bitbol-Lab/DiffPALM Bitbol-Lab/DiffPALM Public

    Differentiable Pairing using Alignment-based Language Models

    Jupyter Notebook 17 3

  4. Bitbol-Lab/Iterative_masking Bitbol-Lab/Iterative_masking Public

    Iterative masking algorithm on MSA Transformer to generate synthetic sequences

    Jupyter Notebook 22 7