Update CITATION.cff #45
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| name: CI/CT/CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest | |
| - name: Run unit tests | |
| run: | | |
| pytest tests | |
| - name: Build PyPI package | |
| if: success() | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| - name: Check if version exists on PyPI | |
| id: pypi_version_check | |
| run: | | |
| pip install requests | |
| PACKAGE_NAME="pyorganoid" | |
| VERSION=$(python setup.py --version) | |
| response=$(curl -s -o /dev/null -w "%{http_code}" https://pypi.org/project/$PACKAGE_NAME/$VERSION/) | |
| if [ $response -eq 200 ]; then | |
| echo "Version $VERSION already exists on PyPI." | |
| echo "::set-output name=exists::true" | |
| else | |
| echo "Version $VERSION does not exist on PyPI." | |
| echo "::set-output name=exists::false" | |
| fi | |
| - name: Publish to PyPI | |
| if: steps.pypi_version_check.outputs.exists == 'false' | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} | |
| run: | | |
| pip install twine | |
| twine upload dist/* --verbose | |
| - name: Check if version exists on Conda | |
| id: conda_version_check | |
| run: | | |
| PACKAGE_NAME="pyorganoid" | |
| VERSION=$(python setup.py --version) | |
| response=$(curl -s -o /dev/null -w "%{http_code}" https://anaconda.org/$ANACONDA_USER/$PACKAGE_NAME/$VERSION/download/linux-64/$PACKAGE_NAME-$VERSION.tar.bz2) | |
| if [ $response -eq 200 ]; then | |
| echo "Version $VERSION already exists on Conda." | |
| echo "::set-output name=exists::true" | |
| else | |
| echo "Version $VERSION does not exist on Conda." | |
| echo "::set-output name=exists::false" | |
| fi | |
| - name: Install Conda and dependencies | |
| if: steps.conda_version_check.outputs.exists == 'false' | |
| uses: goanpeca/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| miniforge-variant: Mambaforge | |
| python-version: 3.8 | |
| - name: Install conda-build and anaconda-client | |
| if: steps.conda_version_check.outputs.exists == 'false' | |
| run: | | |
| conda install -y conda-build anaconda-client | |
| - name: Build Conda package | |
| if: steps.conda_version_check.outputs.exists == 'false' | |
| shell: bash -l {0} | |
| run: | | |
| conda config --set anaconda_upload no | |
| source $(conda info --base)/etc/profile.d/conda.sh | |
| conda activate base | |
| conda-build . --output-folder build_output | |
| - name: Publish to Conda | |
| if: steps.conda_version_check.outputs.exists == 'false' | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.CONDA_TOKEN }} | |
| run: | | |
| source $(conda info --base)/etc/profile.d/conda.sh | |
| conda activate base | |
| anaconda -t $ANACONDA_API_TOKEN upload build_output/**/pyorganoid-*.tar.bz2 --force | |
| - name: Build documentation | |
| if: success() | |
| run: | | |
| cd docs | |
| make clean | |
| make html | |
| - name: Deploy to GitHub Pages | |
| if: success() | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/build/html | |
| publish_branch: gh-pages |