The 1kGP SNP browser is a data portal designed to process and analyze human variation data sourced from the 1000 Genomes 30x on GRCh38 dataset. It was built on Python using Flask for the webserver and Dash for the visualisations. Data was stored using a novel compressed file format: zarr. Full details on how to use the tool included in the user guide and design choices in the documentation.
How to run locally on Python 3:
-- Create a local 'uploads' folder inside the website folder.
pip3 install -r requirements.txt
python3 main.py
The 1kGP SNP browser is avaiable at 1kgpsnpbrowser.rf.gd
