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update hex sticker
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ginberg committed Jun 12, 2024
1 parent d32a595 commit 5e754ce
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Showing 2 changed files with 19 additions and 19 deletions.
38 changes: 19 additions & 19 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -81,9 +81,9 @@ all_checks <- executeChecks(cdm = cdm,
#> median, q75, q95, max
#> ! Table is collected to memory as not all requested estimates are supported on
#> the database side
#> → Start summary of data, at 2024-06-12 14:25:50.275436
#> → Start summary of data, at 2024-06-12 14:48:26.801546
#>
#> ✔ Summary finished, at 2024-06-12 14:25:50.428211
#> ✔ Summary finished, at 2024-06-12 14:48:26.97046
```

The output is a list which contains the following set of tibbles:
Expand All @@ -110,27 +110,27 @@ glimpse(all_checks$conceptSummary)
#> Rows: 6
#> Columns: 25
#> Rowwise:
#> $ drug_concept_id <dbl> 1127433, 1127078, 40229134, 40162522, 1913
#> $ drug <chr> "acetaminophen 325 MG / Oxycodone Hydrochl
#> $ drug_concept_id <dbl> 40231925, 19133768, 1127433, 1127078, 4022
#> $ drug <chr> "acetaminophen 325 MG / Hydrocodone Bitart
#> $ ingredient_concept_id <dbl> 1125315, 1125315, 1125315, 1125315, 112531…
#> $ ingredient <chr> "acetaminophen", "acetaminophen", "acetami…
#> $ n_records <int> 13, 19, 12, 18, 14, 10
#> $ n_patients <int> 11, 13, 11, 15, 13, 9
#> $ n_records <int> 10, 14, 13, 19, 12, 18
#> $ n_patients <int> 9, 13, 11, 13, 11, 15
#> $ domain_id <chr> "Drug", "Drug", "Drug", "Drug", "Drug", "D…
#> $ vocabulary_id <chr> "RxNorm", "RxNorm", "RxNorm", "RxNorm", "R…
#> $ concept_class_id <chr> "Clinical Drug", "Clinical Drug", "Clinica…
#> $ standard_concept <chr> "S", "S", "S", "S", "S", "S"
#> $ concept_code <chr> "1049221", "833036", "1043400", "313782", …
#> $ concept_code <chr> "857005", "282464", "1049221", "833036", "
#> $ valid_start_date <date> 1970-01-01, 1970-01-01, 1970-01-01, 1970-0…
#> $ valid_end_date <date> 2099-12-31, 2099-12-31, 2099-12-31, 2099-1…
#> $ invalid_reason <lgl> NA, NA, NA, NA, NA, NA
#> $ amount_value <dbl> 200, 300, 100, NA, 300, NA
#> $ amount_unit_concept_id <dbl> 8576, 8576, 8576, NA, 8576, NA
#> $ numerator_value <dbl> NA, NA, NA, 2, NA, 2
#> $ numerator_unit_concept_id <dbl> NA, NA, NA, 8576, NA, 8576
#> $ amount_value <dbl> NA, NA, 200, NA, 100, 200
#> $ amount_unit_concept_id <dbl> NA, NA, 9655, NA, 9655, 9655
#> $ numerator_value <dbl> 3, 3, NA, 3, NA, NA
#> $ numerator_unit_concept_id <dbl> 8576, 8576, NA, 8576, NA, NA
#> $ numerator_unit <chr> NA, NA, NA, NA, NA, NA
#> $ denominator_value <dbl> NA, NA, NA, 10, NA, 10
#> $ denominator_unit_concept_id <dbl> NA, NA, NA, 8587, NA, 8587
#> $ denominator_value <dbl> 10, 10, NA, 10, NA, NA
#> $ denominator_unit_concept_id <dbl> 8587, 8587, NA, 8587, NA, NA
#> $ denominator_unit <chr> NA, NA, NA, NA, NA, NA
#> $ amount_unit <chr> NA, NA, NA, NA, NA, NA
#> $ dose_form <chr> "Oral Tablet", "Oral Tablet", "Oral Tablet…
Expand All @@ -141,12 +141,12 @@ all_checks$conceptSummary %>%
#> # Rowwise:
#> drug_concept_id drug
#> <dbl> <chr>
#> 1 1127433 acetaminophen 325 MG / Oxycodone Hydrochloride
#> 2 1127078 acetaminophen 750 MG / Hydrocodone Bitartrate
#> 3 40229134 acetaminophen 21.7 MG/ML / Dextromethorphan
#> 4 40162522 acetaminophen 325 MG Oral Tablet
#> 5 19133768 acetaminophen 160 MG Oral Tablet
#> 6 40231925 acetaminophen 325 MG / Hydrocodone Bitartrate
#> 1 40231925 acetaminophen 325 MG / Hydrocodone Bitartrate
#> 2 19133768 acetaminophen 160 MG Oral Tablet
#> 3 1127433 acetaminophen 325 MG / Oxycodone Hydrochloride
#> 4 1127078 acetaminophen 750 MG / Hydrocodone Bitartrate
#> 5 40229134 acetaminophen 21.7 MG/ML / Dextromethorphan
#> 6 40162522 acetaminophen 325 MG Oral Tablet
```

Other tibbles then contain information from the various checks
Expand Down
Binary file modified man/figures/DrugExposureDiagnostics.png
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