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@dePamphilis

Claude dePamphilis lab at Penn State University

Bioinformatic pipelines and scripts developed in the Claude dePamphilis lab at Penn State University.

Popular repositories Loading

  1. PlantTribes PlantTribes Public

    PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics

    Perl 34 18

  2. Cuscuta_HGT_ms_code Cuscuta_HGT_ms_code Public

    Stolen genes in parasitic plants: convergent horizontal transfer and crosstalk of mobile nucleic acids

    Python 8 2

  3. HGT_PNAS_2016 HGT_PNAS_2016 Public

    Python 2 3

  4. NSF-Summer-REU-Bioinformatics-Training NSF-Summer-REU-Bioinformatics-Training Public

    NSF Summer REU Training

    1 2

  5. biotools biotools Public

    general lab scripts and pipelines for genomic analysis

  6. MetaClassifier MetaClassifier Public

    Forked from ewafula/MetaClassifier

    MetaClassifier is an integrated pipeline for classifying and quantifying DNA metabarcoding data into taxonomy groups

    Python

Repositories

Showing 6 of 6 repositories
  • PlantTribes Public

    PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics

    dePamphilis/PlantTribes’s past year of commit activity
    Perl 34 GPL-3.0 18 6 0 Updated Apr 28, 2023
  • MetaClassifier Public Forked from ewafula/MetaClassifier

    MetaClassifier is an integrated pipeline for classifying and quantifying DNA metabarcoding data into taxonomy groups

    dePamphilis/MetaClassifier’s past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Aug 6, 2022
  • NSF-Summer-REU-Bioinformatics-Training Public

    NSF Summer REU Training

    dePamphilis/NSF-Summer-REU-Bioinformatics-Training’s past year of commit activity
    1 2 0 0 Updated Jun 13, 2019
  • Cuscuta_HGT_ms_code Public

    Stolen genes in parasitic plants: convergent horizontal transfer and crosstalk of mobile nucleic acids

    dePamphilis/Cuscuta_HGT_ms_code’s past year of commit activity
    Python 8 2 0 0 Updated Jan 30, 2019
  • HGT_PNAS_2016 Public
    dePamphilis/HGT_PNAS_2016’s past year of commit activity
    Python 2 3 0 0 Updated Sep 20, 2016
  • biotools Public

    general lab scripts and pipelines for genomic analysis

    dePamphilis/biotools’s past year of commit activity
    0 0 0 0 Updated Dec 5, 2014

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