dealii · bangerth · Mar 5, 2024 · Feb 24, 2024
diff --git a/Nonlinear_PoroViscoelasticity/input-files/1-Franceschini_consolidation/PLOT-Franceschini.gp b/Nonlinear_PoroViscoelasticity/input-files/1-Franceschini_consolidation/PLOT-Franceschini.gp
@@ -1,137 +1,146 @@
-
-# GNUPLOT file to plot consolidation curve Francheschini (2006)
-
-#To see color names:
-# >> show palette colornames
-
-#To see line style, line width, etc.:
-# >> set terminal wxt enhanced dashed
-# >> test
-clear
-reset
-set datafile separator ","
-
-# -------------------------------------------------------------------------------
-# DATA EXTRACTED WITH ENGAUGE FROM FRANCESCHINI PAPER COPIED HERE
-# -------------------------------------------------------------------------------
-$dataFranceschiniFig2Ce << EOD
-#minutes, consolidation ratio
-0.083718,0.0738636
-0.167816,0.127841
-0.251772,0.15625
-0.336392,0.193182
-0.424147,0.21875
-0.504685,0.238636
-0.589026,0.252841
-0.674309,0.269886
-0.757172,0.284091
-0.833952,0.301136
-0.918517,0.318182
-1.01166,0.323864
-1.11424,0.335227
-1.18072,0.34375
-1.27557,0.349432
-1.37804,0.355114
-1.51778,0.360795
-1.6397,0.366477
-1.77142,0.375
-1.87711,0.383523
-2.19081,0.403409
-2.55693,0.426136
-2.87114,0.448864
-3.22396,0.471591
-3.48294,0.488636
-3.91095,0.505682
-4.56453,0.536932
-5.32734,0.559659
-5.98199,0.585227
-6.58858,0.605114
-7.25668,0.625
-7.83963,0.644886
-8.63459,0.659091
-9.14975,0.676136
-10.0776,0.6875
-11.9911,0.71875
-13.995,0.744318
-16.0213,0.761364
-18.341,0.784091
-19.8144,0.798295
-22.2493,0.815341
-24.0366,0.838068
-26.474,0.857955
-28.0535,0.872159
-30.8982,0.886364
-36.0618,0.897727
-40.4932,0.909091
-46.3562,0.917614
-51.0568,0.931818
-56.2341,0.940341
-61.9364,0.948864
-66.9119,0.954545
-72.287,0.960227
-78.094,0.965909
-84.3674,0.971591
-114.922,0.985795
-144.902,0.988636
-175.779,0.994318
-209.156,0.994318
-239.439,0.994318
-268.862,0.994318
-296.126,0.994318
-326.154,0.994318
-352.355,1.00284
-380.66,0.997159
-411.239,0.994318
-EOD
-
-fileNH = "data-for-gnuplot.sol"
-# -------------------------------------------------------------------------------
-set term epslatex size 9cm,6cm color colortext standalone
-set output "Franceschini-consolidation.tex"
-
-unset colorbox
-unset grid
-
-set style line 1  lt 7 lw 2 lc rgb "black"   ps 0.7 dt 1
-set style line 2  lt 2 lw 2 lc rgb "gray25"  ps 0.7 dt 2
-set style line 3  lt 6 lw 2 lc rgb "gray50"  ps 0.7 dt 3
-set style line 4  lt 10 lw 2 lc rgb "gray75"  ps 0.7
-
-set style line 5  lt 2  lw 5   lc rgb "dark-blue"
-
-# ---------  CONSOLIDATION CURVE  -------------------------------------------
-#Final specimen shortening                                                                         ****CHANGE IF NEEDED***
-Umax = 8.1e-2
-
-unset key
-
-# ---------  EPSLATEX  -------------------------------------------
-set key box out vert right above box width -6.0 height 1.0
-
-set logscale x
-set xrange [0.01:1000]
-set yrange [1.1:-0.1] reverse
-
-set xlabel 'time [min]'
-set ylabel 'consolidation ratio'
-
-plot '$dataFranceschiniFig2Ce' with points  ls 3 title 'experimental data', \
-      fileNH using (($1)/60):(-($7)/Umax) with lines ls 5 title 'nonlinear poroelasticity'
-
-
-
-# ---------  PNG  -------------------------------------------
-
-set term png size 450,300 enhanced font 'Verdana,12'
-set key box out vert right above box font 'Verdana,12' width -4.0
-
-set logscale x
-set xrange [0.01:1000]
-set yrange [1.1:-0.1] reverse
-
-set xlabel 'time [min]' font 'Verdana,14'
-set ylabel 'consolidation ratio' font 'Verdana,14'
-
-set output "Franceschini-consolidation.png"
-plot '$dataFranceschiniFig2Ce' with points  ls 1 title 'experimental data', \
-      fileNH using (($1)/60):(-($7)/Umax) with lines ls 5 title 'nonlinear poroelasticity'
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
+
+# GNUPLOT file to plot consolidation curve Francheschini (2006)
+
+#To see color names:
+# >> show palette colornames
+
+#To see line style, line width, etc.:
+# >> set terminal wxt enhanced dashed
+# >> test
+clear
+reset
+set datafile separator ","
+
+# -------------------------------------------------------------------------------
+# DATA EXTRACTED WITH ENGAUGE FROM FRANCESCHINI PAPER COPIED HERE
+# -------------------------------------------------------------------------------
+$dataFranceschiniFig2Ce << EOD
+#minutes, consolidation ratio
+0.083718,0.0738636
+0.167816,0.127841
+0.251772,0.15625
+0.336392,0.193182
+0.424147,0.21875
+0.504685,0.238636
+0.589026,0.252841
+0.674309,0.269886
+0.757172,0.284091
+0.833952,0.301136
+0.918517,0.318182
+1.01166,0.323864
+1.11424,0.335227
+1.18072,0.34375
+1.27557,0.349432
+1.37804,0.355114
+1.51778,0.360795
+1.6397,0.366477
+1.77142,0.375
+1.87711,0.383523
+2.19081,0.403409
+2.55693,0.426136
+2.87114,0.448864
+3.22396,0.471591
+3.48294,0.488636
+3.91095,0.505682
+4.56453,0.536932
+5.32734,0.559659
+5.98199,0.585227
+6.58858,0.605114
+7.25668,0.625
+7.83963,0.644886
+8.63459,0.659091
+9.14975,0.676136
+10.0776,0.6875
+11.9911,0.71875
+13.995,0.744318
+16.0213,0.761364
+18.341,0.784091
+19.8144,0.798295
+22.2493,0.815341
+24.0366,0.838068
+26.474,0.857955
+28.0535,0.872159
+30.8982,0.886364
+36.0618,0.897727
+40.4932,0.909091
+46.3562,0.917614
+51.0568,0.931818
+56.2341,0.940341
+61.9364,0.948864
+66.9119,0.954545
+72.287,0.960227
+78.094,0.965909
+84.3674,0.971591
+114.922,0.985795
+144.902,0.988636
+175.779,0.994318
+209.156,0.994318
+239.439,0.994318
+268.862,0.994318
+296.126,0.994318
+326.154,0.994318
+352.355,1.00284
+380.66,0.997159
+411.239,0.994318
+EOD
+
+fileNH = "data-for-gnuplot.sol"
+# -------------------------------------------------------------------------------
+set term epslatex size 9cm,6cm color colortext standalone
+set output "Franceschini-consolidation.tex"
+
+unset colorbox
+unset grid
+
+set style line 1  lt 7 lw 2 lc rgb "black"   ps 0.7 dt 1
+set style line 2  lt 2 lw 2 lc rgb "gray25"  ps 0.7 dt 2
+set style line 3  lt 6 lw 2 lc rgb "gray50"  ps 0.7 dt 3
+set style line 4  lt 10 lw 2 lc rgb "gray75"  ps 0.7
+
+set style line 5  lt 2  lw 5   lc rgb "dark-blue"
+
+# ---------  CONSOLIDATION CURVE  -------------------------------------------
+#Final specimen shortening                                                                         ****CHANGE IF NEEDED***
+Umax = 8.1e-2
+
+unset key
+
+# ---------  EPSLATEX  -------------------------------------------
+set key box out vert right above box width -6.0 height 1.0
+
+set logscale x
+set xrange [0.01:1000]
+set yrange [1.1:-0.1] reverse
+
+set xlabel 'time [min]'
+set ylabel 'consolidation ratio'
+
+plot '$dataFranceschiniFig2Ce' with points  ls 3 title 'experimental data', \
+      fileNH using (($1)/60):(-($7)/Umax) with lines ls 5 title 'nonlinear poroelasticity'
+
+
+
+# ---------  PNG  -------------------------------------------
+
+set term png size 450,300 enhanced font 'Verdana,12'
+set key box out vert right above box font 'Verdana,12' width -4.0
+
+set logscale x
+set xrange [0.01:1000]
+set yrange [1.1:-0.1] reverse
+
+set xlabel 'time [min]' font 'Verdana,14'
+set ylabel 'consolidation ratio' font 'Verdana,14'
+
+set output "Franceschini-consolidation.png"
+plot '$dataFranceschiniFig2Ce' with points  ls 1 title 'experimental data', \
+      fileNH using (($1)/60):(-($7)/Umax) with lines ls 5 title 'nonlinear poroelasticity'
diff --git a/...lasticity/input-files/2-Graz-loading_poroelasticity/compression/PLOT-brain_g-mm-s-COMP.gp b/...lasticity/input-files/2-Graz-loading_poroelasticity/compression/PLOT-brain_g-mm-s-COMP.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****

diff --git a/...iscoelasticity/input-files/2-Graz-loading_poroelasticity/shear/PLOT-brain_g-mm-s-SHEAR.gp b/...iscoelasticity/input-files/2-Graz-loading_poroelasticity/shear/PLOT-brain_g-mm-s-SHEAR.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****

diff --git a/...scoelasticity/input-files/2-Graz-loading_poroelasticity/tension/PLOT-brain_g-mm-s-TENS.gp b/...scoelasticity/input-files/2-Graz-loading_poroelasticity/tension/PLOT-brain_g-mm-s-TENS.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****

diff --git a/...ity/input-files/3-Graz-loading_poro-viscoelasticity/compression/PLOT-brain_g-mm-s-COMP.gp b/...ity/input-files/3-Graz-loading_poro-viscoelasticity/compression/PLOT-brain_g-mm-s-COMP.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****

diff --git a/...asticity/input-files/3-Graz-loading_poro-viscoelasticity/shear/PLOT-brain_g-mm-s-SHEAR.gp b/...asticity/input-files/3-Graz-loading_poro-viscoelasticity/shear/PLOT-brain_g-mm-s-SHEAR.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****

diff --git a/...sticity/input-files/3-Graz-loading_poro-viscoelasticity/tension/PLOT-brain_g-mm-s-TENS.gp b/...sticity/input-files/3-Graz-loading_poro-viscoelasticity/tension/PLOT-brain_g-mm-s-TENS.gp
@@ -1,3 +1,12 @@
+## -----------------------------------------------------------------------------
+##
+## SPDX-License-Identifier: LGPL-2.1-or-later
+## Copyright (C) 2020 by Ester Comellas
+## Copyright (C) 2020 by Jean-Paul Pelteret
+##
+## This file is part of the deal.II code gallery.
+##
+## -----------------------------------------------------------------------------
 
 #GNUPLOT file to plot graphs of biomechanical brain tests in Budday et al 2017
 # **** cycles must be separated in the .sol file by two blank lines ****