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Update update_database.py
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Update defaults to `/n/..` (aka. o2 notation). Otherwise db_update will fail on o2 if not both `-s` and `-d` flags are defined.
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sacdallago authored Oct 22, 2018
1 parent 370df64 commit 1f9f35d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions evcouplings/utils/update_database.py
Original file line number Diff line number Diff line change
Expand Up @@ -177,8 +177,8 @@ def run(**kwargs):

@click.command(context_settings=CONTEXT_SETTINGS)
# run settings
@click.option("-s", "--sifts", default="/groups/marks/databases/SIFTS/", help="SIFTS output directory")
@click.option("-d", "--db", default="/groups/marks/databases/jackhmmer/", help="Uniprot output directory")
@click.option("-s", "--sifts", default="/n/groups/marks/databases/SIFTS/", help="SIFTS output directory")
@click.option("-d", "--db", default="/n/groups/marks/databases/jackhmmer/", help="Uniprot output directory")
@click.option("-l", "--symlink", default=False, is_flag=True,
help="Creates symlink with ending '_current.' pointing to the newly created db files")
@click.option("-v", "--verbose", default=False, is_flag=True, help="Enables verbose output")
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