Merge pull request #272 from lldelisle/fix

Fix

README.md

@@ -42,12 +42,12 @@ pyGenomeTracks works with python >=3.6.
 The recommended way to install pyGenomeTracks is via conda
 
 ```bash
-$ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks pyhon=3.7
+$ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks python=3.7
 ```
 To get a specific version, one can specify it. For example:
 
 ```bash
-$ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks=3.5 pyhon=3.7
+$ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks=3.5 python=3.7
 ```
 
 Also, pyGenomeTracks can be installed using pip

docs/content/installation.rst

@@ -26,13 +26,13 @@ We encourage users to use ``conda`` installation to install pygenometracks. All
 
 .. code:: bash
 
-    $ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks pyhon=3.7
+    $ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks python=3.7
 
 To get a specific version, one can specify it. For example:
 
 .. code:: bash
 
-    $ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks=3.5 pyhon=3.7
+    $ conda create -n pygenometracks -c bioconda -c conda-forge pygenometracks=3.5 python=3.7
 
 Command line installation using ``pip``
 -----------------------------------------

docs/content/releases/3.3.rst

@@ -2,7 +2,7 @@
 ===
 
 Release 3.3 adds:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^
 
 - a documentation on readthedocs: https://pygenometracks.readthedocs.io
 - progress bar for bed, gtf, bedgraph, narrowPeak, epilogos
@@ -26,7 +26,7 @@ Release 3.3 adds:
 - ``colormap`` can now be set in bedgraphMatrix tracks.
 
 bug fixes:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^
 
 - if a bed with no interval is provided, pgt no longer exit.
 - When an exon had both UTR start and UTR end within it, only the UTR start was considered.

docs/content/releases/3.4.rst

@@ -9,7 +9,7 @@ Improved documentation:
 - Documentation of each track
 
 Enhancements:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^
 
 - Different bed files format (BED3, BED4, BED5, BED6, BED8, BED9, BED12) is guessed based on the first line and rely not only on number of columns but on the type of each column (string/float etc.). This way, broadPeaks/gappedPeaks and other bed-like formats can be accepted as ``file_type = bed`` without preprocessing.
 
@@ -28,6 +28,6 @@ Enhancements:
 - Both ``type = line`` and ``type = lines`` are working in bedgraph_matrix
 
 Bugfix:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^
 
 - In version 3.3, if you were using a colormap in bed the ``border_color`` and ``color_utr`` were ignored. Now each one can be set to different color/colormap/bed_rgb.

docs/content/releases/3.5.rst

@@ -2,7 +2,7 @@
 ===
 
 Enhancements:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^
 
 - pyGenomeTracks goes much faster:
 
@@ -23,7 +23,7 @@ Enhancements:
 - For vlines, the line_width can now be set.
 
 Minor enhancements:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^
 
 - Bedgraph with NA values in the 4-th column do not raise error anymore.
 
@@ -48,7 +48,7 @@ Minor enhancements:
 - Improve the documentation regarding the installation. We highly recommand to use conda.
 
 Bugfixes:
-^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^
 
 - For bed tracks when ``gene_rows`` or ``global_max_row`` was set the last row was very close to the bottom (sometimes even overlaying the next track). Now it is vertically centered and do not go over the track height.