-
Notifications
You must be signed in to change notification settings - Fork 115
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #386 from deeptools/develop
Release 3.7
- Loading branch information
Showing
210 changed files
with
25,607 additions
and
922 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,5 @@ | ||
| # yaml file to configure readthedocs build | ||
| python: | ||
| version: 3.6 | ||
| version: 3.7 | ||
| setup_py_install: true | ||
| pip_install: False |
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,118 @@ | ||
| pr: | ||
| autoCancel: true | ||
|
|
||
| stages: | ||
| - stage: test | ||
| jobs: | ||
| - job: Linux | ||
| timeoutInMinutes: 0 | ||
| pool: | ||
| vmImage: 'ubuntu-latest' | ||
| strategy: | ||
| matrix: | ||
| Python37LowMatplotlib: | ||
| python.version: '3.7' | ||
| matplotlib.version: '3.1.1' | ||
| Python37HighMatplotlib: | ||
| python.version: '3.7' | ||
| matplotlib.version: '3.5.1' | ||
| Python38LowMatplotlib: | ||
| python.version: '3.8' | ||
| matplotlib.version: '3.1.1' | ||
| Python38HighMatplotlib: | ||
| python.version: '3.8' | ||
| matplotlib.version: '3.5.1' | ||
| Python39HighMatplotlib: | ||
| python.version: '3.9' | ||
| matplotlib.version: '3.5.1' | ||
|
|
||
| steps: | ||
| - bash: | | ||
| echo "##vso[task.prependpath]$CONDA/bin" | ||
| hash -r | ||
| displayName: Add conda to PATH | ||
| - bash: | | ||
| conda config --set always_yes yes --set changeps1 no | ||
| conda info -a | ||
| cat requirements_CI.txt | awk -v v=$(matplotlib.version) '{if($0~/matplotlib/){$0="matplotlib =="v}; print}' > requirements_CI_updated.txt | ||
| conda create -n pygenometracks --yes -c conda-forge -c bioconda python=$(python.version) mamba | ||
| source activate pygenometracks | ||
| mamba install --yes -c defaults -c conda-forge -c bioconda --file requirements_CI_updated.txt | ||
| python setup.py install | ||
| displayName: installing dependencies | ||
| - script: | | ||
| source activate pygenometracks | ||
| flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E712,W503 | ||
| displayName: linting | ||
| - script: | | ||
| source activate pygenometracks | ||
| py.test pygenometracks --doctest-modules -n 4 | ||
| displayName: pytest | ||
| - job: OSX | ||
| timeoutInMinutes: 0 | ||
| pool: | ||
| vmImage: 'macOS-11' | ||
| strategy: | ||
| matrix: | ||
| Python37LowMatplotlib: | ||
| python.version: '3.7' | ||
| matplotlib.version: '3.1.1' | ||
| Python37HighMatplotlib: | ||
| python.version: '3.7' | ||
| matplotlib.version: '3.5.1' | ||
| Python38LowMatplotlib: | ||
| python.version: '3.8' | ||
| matplotlib.version: '3.1.1' | ||
| Python38HighMatplotlib: | ||
| python.version: '3.8' | ||
| matplotlib.version: '3.5.1' | ||
| Python39HighMatplotlib: | ||
| python.version: '3.9' | ||
| matplotlib.version: '3.5.1' | ||
|
|
||
| steps: | ||
| - bash: | | ||
| echo "##vso[task.prependpath]$CONDA/bin" | ||
| hash -r | ||
| displayName: Add conda to PATH | ||
| # On Hosted macOS, the agent user doesn't have ownership of Miniconda's installation directory/ | ||
| # We need to take ownership if we want to update conda or install packages globally | ||
| - bash: sudo chown -R $USER $CONDA | ||
| displayName: Take ownership of conda installation | ||
| - bash: | | ||
| conda config --set always_yes yes --set changeps1 no | ||
| conda info -a | ||
| cat requirements_CI.txt | awk -v v=$(matplotlib.version) '{if($0~/matplotlib/){$0="matplotlib =="v}; print}' > requirements_CI_updated.txt | ||
| conda create -n pygenometracks --yes -c conda-forge -c bioconda python=$(python.version) mamba | ||
| source activate pygenometracks | ||
| mamba install --yes -c defaults -c conda-forge -c bioconda --file requirements_CI_updated.txt | ||
| python setup.py install | ||
| displayName: installing dependencies | ||
| - script: | | ||
| source activate pygenometracks | ||
| flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E712,W503 | ||
| displayName: linting | ||
| - script: | | ||
| source activate pygenometracks | ||
| py.test pygenometracks --doctest-modules -n 4 | ||
| displayName: pytest | ||
| - ${{ if eq(variables['Build.SourceBranch'], 'refs/heads/master') }}: | ||
| - stage: Deploy | ||
| dependsOn: [test] | ||
| condition: succeeded() | ||
| jobs: | ||
| - job: pypi | ||
| pool: | ||
| vmImage: 'Ubuntu-latest' | ||
| container: python:3.8 | ||
| steps: | ||
| - script: | | ||
| python setup.py sdist bdist_wheel | ||
| python -m pip install --user --upgrade twine | ||
| python -m twine upload -r pypi dist/* | ||
| env: | ||
| TWINE_USERNAME: lldelisle | ||
| TWINE_PASSWORD: $(TWINE_LUCILLE_PASSWORD) | ||
| displayName: 'Push to Python Package Index' |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.