Scripts to replicate analyses in GridLMM paper.

Necessary datasets:

Figure 1: Arabidopsis phenotypes

genotype data

phenotype data

Atwell_one_trait.R

Atwell_GxE.R

Power_simulations_Atwell_Wald.R

Figure 2: WTCC body weight

Data is provided in the BGLR package

Genetic map

WTCC_BW.R

Figure 3: Arabidopsis gene expression

Expression data

Kinship matrix

At_gene_expression.R

External software used

GEMMA

LDAK