(release/v20.07): feat(Dgraph): add utility to export backup data. (#…

…6550)

This utility allows to take a single backup (full or incremental) and export the data
and the schema inside it to RDF. Encrypted backups are supported.

Fixes DGRAPH-2465

(cherry picked from commit 369a5c1)

dgraph/cmd/root_ee.go

@@ -22,6 +22,7 @@ func init() {
 	subcommands = append(subcommands,
 		&backup.Restore,
 		&backup.LsBackup,
+		&backup.ExportBackup,
 		&acl.CmdAcl,
 	)
 }

ee/backup/run.go

@@ -33,15 +33,23 @@ var Restore x.SubCommand
 // LsBackup is the sub-command used to list the backups in a folder.
 var LsBackup x.SubCommand
 
+var ExportBackup x.SubCommand
+
 var opt struct {
-	backupId, location, pdir, zero string
-	key                            x.SensitiveByteSlice
-	forceZero                      bool
+	backupId    string
+	location    string
+	pdir        string
+	zero        string
+	key         x.SensitiveByteSlice
+	forceZero   bool
+	destination string
+	format      string
 }
 
 func init() {
 	initRestore()
 	initBackupLs()
+	initExportBackup()
 }
 
 func initRestore() {
@@ -247,3 +255,36 @@ func runLsbackupCmd() error {
 
 	return nil
 }
+
+func initExportBackup() {
+	ExportBackup.Cmd = &cobra.Command{
+		Use:   "export_backup",
+		Short: "Export data inside single full or incremental backup.",
+		Long:  ``,
+		Args:  cobra.NoArgs,
+		Run: func(cmd *cobra.Command, args []string) {
+			defer x.StartProfile(ExportBackup.Conf).Stop()
+			if err := runExportBackup(); err != nil {
+				fmt.Fprintln(os.Stderr, err)
+				os.Exit(1)
+			}
+		},
+	}
+
+	flag := ExportBackup.Cmd.Flags()
+	flag.StringVarP(&opt.location, "location", "l", "",
+		"Sets the location of the backup. Only file URIs are supported for now.")
+	flag.StringVarP(&opt.format, "format", "f", "rdf",
+		"The format of the export output. Accepts a value of either rdf or json")
+	enc.RegisterFlags(flag)
+}
+
+func runExportBackup() error {
+	var err error
+	if opt.key, err = enc.ReadKey(ExportBackup.Conf); err != nil {
+		return err
+	}
+
+	exporter := worker.BackupExporter{}
+	return exporter.ExportBackup(opt.location, opt.destination, opt.format, opt.key)
+}

worker/export.go

@@ -399,6 +399,14 @@ func export(ctx context.Context, in *pb.ExportRequest) error {
 	}
 	glog.Infof("Running export for group %d at timestamp %d.", in.GroupId, in.ReadTs)
 
+	return exportInternal(ctx, in, pstore, false)
+}
+
+// exportInternal contains the core logic to export a Dgraph database. If skipZero is set to
+// false, the parts of this method that require to talk to zero will be skipped. This is useful
+// when exporting a p directory directly from disk without a running cluster.
+func exportInternal(ctx context.Context, in *pb.ExportRequest, db *badger.DB,
+	skipZero bool) error {
 	uts := time.Unix(in.UnixTs, 0)
 	bdir := path.Join(x.WorkerConfig.ExportPath, fmt.Sprintf(
 		"dgraph.r%d.u%s", in.ReadTs, uts.UTC().Format("0102.1504")))
@@ -446,7 +454,7 @@ func export(ctx context.Context, in *pb.ExportRequest) error {
 		return errors.Wrapf(err, "cannot open export GraphQL schema file at %s", gqlSchemaPath)
 	}
 
-	stream := pstore.NewStreamAt(in.ReadTs)
+	stream := db.NewStreamAt(in.ReadTs)
 	stream.LogPrefix = "Export"
 	stream.ChooseKey = func(item *badger.Item) bool {
 		// Skip exporting delete data including Schema and Types.
@@ -473,7 +481,7 @@ func export(ctx context.Context, in *pb.ExportRequest) error {
 			return false
 		}
 
-		if !pk.IsType() {
+		if !pk.IsType() && !skipZero {
 			if servesTablet, err := groups().ServesTablet(pk.Attr); err != nil || !servesTablet {
 				return false
 			}

worker/file_handler.go

@@ -13,15 +13,23 @@
 package worker
 
 import (
+	"compress/gzip"
+	"context"
 	"encoding/json"
 	"fmt"
+	"io"
 	"io/ioutil"
+	"math"
 	"net/url"
 	"os"
 	"path/filepath"
 	"sort"
 	"strings"
+	"time"
 
+	"github.com/dgraph-io/badger/v2"
+	"github.com/dgraph-io/badger/v2/options"
+	"github.com/dgraph-io/dgraph/ee/enc"
 	"github.com/dgraph-io/dgraph/protos/pb"
 	"github.com/dgraph-io/dgraph/x"
 
@@ -34,6 +42,12 @@ type fileHandler struct {
 	fp *os.File
 }
 
+// BackupExporter is an alias of fileHandler so that this struct can be used
+// by the export_backup command.
+type BackupExporter struct {
+	fileHandler
+}
+
 // readManifest reads a manifest file at path using the handler.
 // Returns nil on success, otherwise an error.
 func (h *fileHandler) readManifest(path string, m *Manifest) error {
@@ -253,3 +267,135 @@ func pathExist(path string) bool {
 	}
 	return !os.IsNotExist(err) && !os.IsPermission(err)
 }
+
+func (h *fileHandler) ExportBackup(backupDir, exportDir, format string,
+	key x.SensitiveByteSlice) error {
+	if format != "json" && format != "rdf" {
+		return errors.Errorf("invalid format %s", format)
+	}
+
+	// Create exportDir and temporary folder to store the restored backup.
+	var err error
+	exportDir, err = filepath.Abs(exportDir)
+	if err != nil {
+		return errors.Wrapf(err, "cannot convert path %s to absolute path", exportDir)
+	}
+	if err := os.MkdirAll(exportDir, 0755); err != nil {
+		return errors.Wrapf(err, "cannot create dir %s", exportDir)
+	}
+	tmpDir, err := ioutil.TempDir("", "export_backup")
+	if err != nil {
+		return errors.Wrapf(err, "cannot create temp dir")
+	}
+
+	// Function to load the a single backup file.
+	loadFn := func(r io.Reader, groupId uint32, preds predicateSet) (uint64, error) {
+		dir := filepath.Join(tmpDir, fmt.Sprintf("p%d", groupId))
+
+		r, err := enc.GetReader(key, r)
+		if err != nil {
+			return 0, err
+		}
+
+		gzReader, err := gzip.NewReader(r)
+		if err != nil {
+			if len(key) != 0 {
+				err = errors.Wrap(err,
+					"Unable to read the backup. Ensure the encryption key is correct.")
+			}
+			return 0, errors.Wrapf(err, "cannot create gzip reader")
+		}
+		// The badger DB should be opened only after creating the backup
+		// file reader and verifying the encryption in the backup file.
+		db, err := badger.OpenManaged(badger.DefaultOptions(dir).
+			WithSyncWrites(false).
+			WithTableLoadingMode(options.MemoryMap).
+			WithValueThreshold(1 << 10).
+			WithNumVersionsToKeep(math.MaxInt32).
+			WithEncryptionKey(key))
+
+		if err != nil {
+			return 0, errors.Wrapf(err, "cannot open DB at %s", dir)
+		}
+		defer db.Close()
+		_, err = loadFromBackup(db, gzReader, 0, preds)
+		if err != nil {
+			return 0, errors.Wrapf(err, "cannot load backup")
+		}
+		return 0, x.WriteGroupIdFile(dir, uint32(groupId))
+	}
+
+	// Read manifest from folder.
+	manifest := &Manifest{}
+	manifestPath := filepath.Join(backupDir, backupManifest)
+	if err := h.ReadManifest(manifestPath, manifest); err != nil {
+		return errors.Wrapf(err, "cannot read manifest at %s", manifestPath)
+	}
+	manifest.Path = manifestPath
+	if manifest.Since == 0 || len(manifest.Groups) == 0 {
+		return errors.Errorf("no data found in backup")
+	}
+
+	// Restore backup to disk.
+	for gid := range manifest.Groups {
+		file := filepath.Join(backupDir, backupName(manifest.Since, gid))
+		fp, err := os.Open(file)
+		if err != nil {
+			return errors.Wrapf(err, "cannot open backup file at %s", file)
+		}
+		defer fp.Close()
+
+		// Only restore the predicates that were assigned to this group at the time
+		// of the last backup.
+		predSet := manifest.getPredsInGroup(gid)
+
+		_, err = loadFn(fp, gid, predSet)
+		if err != nil {
+			return err
+		}
+	}
+
+	// Export the data from the p directories produced by the last step.
+	ch := make(chan error, len(manifest.Groups))
+	for gid := range manifest.Groups {
+		go func(group uint32) {
+			dir := filepath.Join(tmpDir, fmt.Sprintf("p%d", group))
+			db, err := badger.OpenManaged(badger.DefaultOptions(dir).
+				WithSyncWrites(false).
+				WithTableLoadingMode(options.MemoryMap).
+				WithValueThreshold(1 << 10).
+				WithNumVersionsToKeep(math.MaxInt32).
+				WithEncryptionKey(key))
+
+			if err != nil {
+				ch <- errors.Wrapf(err, "cannot open DB at %s", dir)
+				return
+			}
+			defer db.Close()
+
+			req := &pb.ExportRequest{
+				GroupId:     group,
+				ReadTs:      manifest.Since,
+				UnixTs:      time.Now().Unix(),
+				Format:      format,
+			}
+
+			err = exportInternal(context.Background(), req, db, true)
+			ch <- errors.Wrapf(err, "cannot export data inside DB at %s", dir)
+		}(gid)
+	}
+
+	for i := 0; i < len(manifest.Groups); i++ {
+		err := <-ch
+		if err != nil {
+			return err
+		}
+	}
+
+	// Clean up temporary directory.
+	if err := os.RemoveAll(tmpDir); err != nil {
+		return errors.Wrapf(err, "cannot remove temp directory at %s", tmpDir)
+	}
+
+	return nil
+}