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Ontology Fusion Service using Bayesian Knowledge Base Fusion and Reasoning

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<ADD APP NAME HERE>

<ADD APP DESCRIPTION HERE>

Trapi Transaction

Examples of the Trapi Query, Response, and Meta Knowledge Graph Objects that this app supports.

Query

Click to view json example 
{
  "message": {
    "query_graph": {
      "nodes": {
        "n0": {
          "ids": [
            "<ADD BIOLINK CURIE HERE>",
            "<ADD BIOLINK CURIE HERE>"
          ],
          "categories": [
            "<ADD BIOLINK ENTITY TYPE HERE>",
            "<ADD BIOLINK ENTITY TYPE HERE>"
          ],
          "is_set": <add boolean here>,
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": <add boolean here>,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        },
        "n1": {
          "ids": [
            "<ADD BIOLINK CURIE HERE>",
            "<ADD BIOLINK CURIE HERE>"
          ],
          "categories": [
            "<ADD BIOLINK ENTITY TYPE HERE>",
            "<ADD BIOLINK ENTITY TYPE HERE>"
          ],
          "is_set": <add boolean here>,
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": <add boolean here>,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        },
      },
      "edges": {
        "e0": {
          "predicates": [
            "<ADD BIOLINK PREDICATE HERE>",
            "<ADD BIOLINK PREDICATE HERE>"
          ],
          "subject": "n0",
          "object": "n1",
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": false,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        }
      }
    },
    "knowledge_graph": {},
    "results": {}
  }
}

Response

Click to view json example 
{
  "message": {
    "query_graph": {
      "nodes": {
        "n0": {
          "ids": [
            "<ADD BIOLINK CURIE HERE>",
            "<ADD BIOLINK CURIE HERE>"
          ],
          "categories": [
            "<ADD BIOLINK ENTITY TYPE HERE>",
            "<ADD BIOLINK ENTITY TYPE HERE>"
          ],
          "is_set": <add boolean here>,
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": <add boolean here>,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        },
        "n1": {
          "ids": [
            "<ADD BIOLINK CURIE HERE>",
            "<ADD BIOLINK CURIE HERE>"
          ],
          "categories": [
            "<ADD BIOLINK ENTITY TYPE HERE>",
            "<ADD BIOLINK ENTITY TYPE HERE>"
          ],
          "is_set": <add boolean here>,
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": <add boolean here>,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        },
      },
      "edges": {
        "e0": {
          "predicates": [
            "<ADD BIOLINK PREDICATE HERE>",
            "<ADD BIOLINK PREDICATE HERE>"
          ],
          "subject": "n0",
          "object": "n1",
          "constraints": [
            {
              "id": "<ADD BIOLINK CURIE HERE>",
              "name": "<ADD HUMAN READABLE NAME FOR THE ID HERE>",
              "not": false,
              "operator": "<ADD AN OPERATOR HERE>",
              "value": [
                "<ADD ATTRIBUTE VALUE HERE>",
                "<ADD ATTRIBUTE VALUE HERE>"
              ],
              "unit_id": [
                "<ADD UNIT_ID FOR VALUE FIELD HERE>",
                "<ADD UNIT_ID FOR VALUE FIELD HERE>"
              ],
              "unit_name": [
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>",
                "<ADD HUMAN READABLE NAME FOR THE VALUE FIELD HERE>"
              ]
            }
          ]
        }
      }
    },
    "knowledge_graph": {
      "nodes": {
        "name": "<ADD BIOLINK ENTITY NAME HERE>",
        "categories": [
          "<ADD BIOLINK ENTITY TYPE HERE>",
          "<ADD BIOLINK ENTITY TYPE HERE>"
        ],
        "attributes": [
          {
            "attribute_type_id": "<ADD BIOLINK CURIE HERE>",
            "original_attribute_name": "<ADD TERM USED BY ORIGINAL SOURCE HERE>",
            "value": "<ADD ATTRIBUTE VALUE HERE>",
            "value_type_id": "<ADD BIOLINK CURIE HERE>",
            "attribute_source": "<ADD ATTRIBUTE SOURCE HERE>",
            "value_url": "<ADD URL TO ADDITIONAL DOCUMENTATION FOR THIS VALUE>",
            "description": "<ADD DESCRIPTION HERE>",
            "attributes": [
              {
                "attribute_type_id": "<ADD BIOLINK CURIE HERE>",
                "original_attribute_name": "<ADD TERM USED BY ORIGINAL SOURCE HERE>",
                "value": "<ADD ATTRIBUTE VALUE HERE>",
                "value_type_id": "<ADD BIOLINK CURIE HERE>",
                "attribute_source": "<ADD ATTRIBUTE SOURCE HERE>",
                "value_url": "<ADD URL TO ADDITIONAL DOCUMENTATION FOR THIS VALUE>",
                "description": "<ADD DESCRIPTION HERE>",
              }
            ]
          }
        ]
      },
      "edges": {
        "e0": {
          "predicate": "<ADD PREDICATE HERE>",
          "subject": "n0",
          "object": "n1",
          "attributes": [
            {
              "attribute_type_id": "<ADD BIOLINK CURIE HERE>",
              "original_attribute_name": "<ADD TERM USED BY ORIGINAL SOURCE HERE>",
              "value": "<ADD ATTRIBUTE VALUE HERE>",
              "value_type_id": "<ADD BIOLINK CURIE HERE>",
              "attribute_source": "<ADD ATTRIBUTE SOURCE HERE>",
              "value_url": "<ADD URL TO ADDITIONAL DOCUMENTATION FOR THIS VALUE>",
              "description": "<ADD DESCRIPTION HERE>",
              "attributes": [
                {
                  "attribute_type_id": "<ADD BIOLINK CURIE HERE>",
                  "original_attribute_name": "<ADD TERM USED BY ORIGINAL SOURCE HERE>",
                  "value": "<ADD ATTRIBUTE VALUE HERE>",
                  "value_type_id": "<ADD BIOLINK CURIE HERE>",
                  "attribute_source": "<ADD ATTRIBUTE SOURCE HERE>",
                  "value_url": "<ADD URL TO ADDITIONAL DOCUMENTATION FOR THIS VALUE>",
                  "description": "<ADD DESCRIPTION HERE>",
                }
              ]
            }
          ]
        }
      }
    },
    "results": [
      {
        "node_bindings": {
          "n0": [
            {
              "id": "<ADD NODE CURIE HERE>"
            }
          ],
          "n1": [
            {
              "id": "<ADD NODE CURIE HERE>"
            }
          ]
        },
        "edge_bindings": {
          "e1": [
            {
              "id": "<ADD EDGE ID HERE>"
            }
          ]
        },
        "score": <ADD SCORE HERE>
      },
    ]
  },
  "logs": [],
  "workflow": [
    {
      "id": "<ADD WORKFLOW TYPE HERE>"
    }
  ]
}

Meta Knowledge Graph

Click to view json example 
{
  "nodes": [
    {
      "<ADD BIOLINK ENTITY TYPE HERE>": {
        "id_prefixes":[
          "<ADD BIOLINK ENTITY TYPE HERE>",
          "<ADD BIOLINK ENTITY TYPE HERE>"
        ],
        "attributes": [
          {
            "attribute_type_id": "",
            "attribute_source": "",
            "original_attribute_names": [
              "<ADD META ATTRIBUTE NAME HERE>",
              "<ADD META ATTRIBUTE NAME HERE>"
            ],
            "constraint_use": <add boolean here>,
            "constraint_name": "<ADD CONSTRAINT NAME HERE>" 
          }
        ]
      },
    }
  ],
  "edges": [
    {
      "subject": "<ADD SUBJECT CATEGORY HERE>",
      "object": "<ADD OBJECT CATEGORY HERE",
      "predicate": "<ADD PREDICATE HERE>",
      "attributes": [
        {
          "attribute_type_id": "<ADD ATTRIBUTE CURIE HERE>",
          "attribute_source": "<ADD ATTRIBUTE SOURCE HERE>",
          "original_attribute_names": [
            "<ADD META ATTRIBUTE NAME HERE>",
            "<ADD META ATTRIBUTE NAME HERE>"
          ],
          "constraint_use": <add boolean here>,
          "constraint_name": "<ADD CONSTRAINT NAME HERE>" 
        }
      ]
    }
  ]
}

References

Example Reference 1

Link: <ADD LINK TO REFERENCE HERE>
Description: <ADD DESCRIPTION FOR REFERENCE 2 HERE>

Example Reference 2

Name: <ADD REFERENCE WITH NO WEBSITE>
Description: <ADD DESCRIPTION FOR REFERENCE 2 HERE>

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Ontology Fusion Service using Bayesian Knowledge Base Fusion and Reasoning

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