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src/main/java/org/aksw/gerbil/annotator/impl/neamt/AbstractNeamtAnnotator.java
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| package org.aksw.gerbil.annotator.impl.neamt; | ||
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| import java.io.IOException; | ||
| import java.nio.charset.StandardCharsets; | ||
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| import org.aksw.gerbil.annotator.http.AbstractHttpBasedAnnotator; | ||
| import org.aksw.gerbil.datatypes.ErrorTypes; | ||
| import org.aksw.gerbil.exceptions.GerbilException; | ||
| import org.aksw.gerbil.transfer.nif.Document; | ||
| import org.aksw.gerbil.transfer.nif.data.DocumentImpl; | ||
| import org.aksw.gerbil.transfer.nif.data.NamedEntity; | ||
| import org.aksw.gerbil.transfer.nif.data.SpanImpl; | ||
| import org.apache.commons.io.IOUtils; | ||
| import org.apache.http.HttpEntity; | ||
| import org.apache.http.HttpHeaders; | ||
| import org.apache.http.client.methods.CloseableHttpResponse; | ||
| import org.apache.http.client.methods.HttpPost; | ||
| import org.apache.http.entity.ContentType; | ||
| import org.apache.http.entity.StringEntity; | ||
| import org.apache.http.util.EntityUtils; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
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| import com.google.gson.JsonArray; | ||
| import com.google.gson.JsonElement; | ||
| import com.google.gson.JsonObject; | ||
| import com.google.gson.JsonParser; | ||
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| /** | ||
| * Abstract annotator class for annotation systems that are hosted by <a href= | ||
| * "https://github.com/dice-group/LFQA/tree/main/naive-eamt#na%C3%AFve-eamt-na%C3%AFve-entity-aware-machine-translation-framework">NEAMT</a>. | ||
| * | ||
| * @author Michael Röder (michael.roeder@uni-paderborn.de) | ||
| * | ||
| */ | ||
| public abstract class AbstractNeamtAnnotator extends AbstractHttpBasedAnnotator { | ||
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| private static final Logger LOGGER = LoggerFactory.getLogger(AbstractNeamtAnnotator.class); | ||
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| private static final String MEDIA_TYPE_STRING = ContentType.create("application/json", StandardCharsets.UTF_8) | ||
| .toString(); | ||
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| /** | ||
| * Service URL. | ||
| */ | ||
| protected String serviceUrl; | ||
| /** | ||
| * Component name as defined in the NEAMT service documentation. | ||
| */ | ||
| protected String components; | ||
| /** | ||
| * Language tag. | ||
| */ | ||
| protected String lang; | ||
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| public AbstractNeamtAnnotator(String serviceUrl, String components, String lang) { | ||
| super(); | ||
| this.serviceUrl = serviceUrl; | ||
| this.components = components; | ||
| this.lang = lang; | ||
| } | ||
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| protected Document request(Document document) throws GerbilException { | ||
| String text = document.getText(); | ||
| String documentUri = document.getDocumentURI(); | ||
| LOGGER.info("Started request for {}", documentUri); | ||
| HttpPost request = null; | ||
| try { | ||
| request = createPostRequest(serviceUrl); | ||
| } catch (Exception e) { | ||
| throw new GerbilException("Couldn't create HTTP request.", e, ErrorTypes.UNEXPECTED_EXCEPTION); | ||
| } | ||
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| JsonObject requestBody = createRequestBody(document); | ||
| request.setEntity(new StringEntity(requestBody.toString(), StandardCharsets.UTF_8)); | ||
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| request.addHeader(HttpHeaders.CONTENT_TYPE, MEDIA_TYPE_STRING); | ||
| request.addHeader(HttpHeaders.ACCEPT, MEDIA_TYPE_STRING); | ||
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| HttpEntity entity = null; | ||
| CloseableHttpResponse response = null; | ||
| Document resultDoc = null; | ||
| try { | ||
| response = sendRequest(request); | ||
| entity = response.getEntity(); | ||
| try { | ||
| resultDoc = new DocumentImpl(text, documentUri); | ||
| String content = IOUtils.toString(entity.getContent()); | ||
| JsonObject outJson = new JsonParser().parse(content).getAsJsonObject(); | ||
| parseMarkings(outJson, resultDoc); | ||
| } catch (Exception e) { | ||
| LOGGER.error("Couldn't parse the response.", e); | ||
| throw new GerbilException("Couldn't parse the response.", e, ErrorTypes.UNEXPECTED_EXCEPTION); | ||
| } | ||
| } finally { | ||
| closeRequest(request); | ||
| if (entity != null) { | ||
| try { | ||
| EntityUtils.consume(entity); | ||
| } catch (IOException e1) { | ||
| } | ||
| } | ||
| IOUtils.closeQuietly(response); | ||
| } | ||
| LOGGER.info("Finished request for {}", resultDoc.getDocumentURI()); | ||
| return resultDoc; | ||
| } | ||
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| protected JsonObject createRequestBody(Document document) { | ||
| JsonObject requestBody = new JsonObject(); | ||
| requestBody.addProperty("query", document.getText()); | ||
| requestBody.addProperty("components", components); | ||
| requestBody.addProperty("full_json", true); | ||
| requestBody.addProperty("lang", lang); | ||
| return requestBody; | ||
| } | ||
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| protected void parseMarkings(JsonObject outJson, Document resultDoc) { | ||
| if (outJson.has("ent_mentions")) { | ||
| JsonElement element = outJson.get("ent_mentions"); | ||
| if (element.isJsonArray()) { | ||
| JsonArray mentions = element.getAsJsonArray(); | ||
| mentions.forEach(m -> parseMarking(m, resultDoc)); | ||
| return; | ||
| } | ||
| } | ||
| LOGGER.warn("Couldn't find any mentions in the result \"{}\". It will be ignored.", outJson.toString()); | ||
| } | ||
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| protected void parseMarking(JsonElement mentionElement, Document resultDoc) { | ||
| if (mentionElement.isJsonObject()) { | ||
| JsonObject mentionObj = mentionElement.getAsJsonObject(); | ||
| // The marking should have start and end | ||
| if (mentionObj.has("start") && mentionObj.has("end")) { | ||
| int start = mentionObj.get("start").getAsInt(); | ||
| int end = mentionObj.get("end").getAsInt(); | ||
| String iri = null; | ||
| // It may have a link | ||
| if (mentionObj.has("link")) { | ||
| iri = mentionObj.get("link").getAsString(); | ||
| if (iri.isEmpty()) { | ||
| iri = null; | ||
| } else { | ||
| // It is just the Wikidata ID, so we have to add the namespace | ||
| iri = "http://www.wikidata.org/entity/" + iri; | ||
| } | ||
| } | ||
| // If we have found no IRI, we have a Span, otherwise a NamedEntity | ||
| if (iri == null) { | ||
| resultDoc.addMarking(new SpanImpl(start, end - start)); | ||
| } else { | ||
| resultDoc.addMarking(new NamedEntity(start, end - start, iri)); | ||
| } | ||
| return; // We can return without problems | ||
| } | ||
| } | ||
| // Something went wrong | ||
| LOGGER.warn("Couldn't parse mention \"{}\". It will be ignored.", mentionElement.toString()); | ||
| } | ||
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| } |
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src/main/java/org/aksw/gerbil/annotator/impl/neamt/NeamtD2KBAnnotator.java
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| package org.aksw.gerbil.annotator.impl.neamt; | ||
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| import java.util.List; | ||
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| import org.aksw.gerbil.annotator.D2KBAnnotator; | ||
| import org.aksw.gerbil.exceptions.GerbilException; | ||
| import org.aksw.gerbil.transfer.nif.Document; | ||
| import org.aksw.gerbil.transfer.nif.MeaningSpan; | ||
| import org.aksw.gerbil.transfer.nif.Span; | ||
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| import com.google.gson.JsonArray; | ||
| import com.google.gson.JsonObject; | ||
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| public class NeamtD2KBAnnotator extends AbstractNeamtAnnotator implements D2KBAnnotator { | ||
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| public NeamtD2KBAnnotator(String serviceUrl, String components, String lang) { | ||
| super(serviceUrl, components, lang); | ||
| } | ||
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| @Override | ||
| public List<MeaningSpan> performD2KBTask(Document document) throws GerbilException { | ||
| return request(document).getMarkings(MeaningSpan.class); | ||
| } | ||
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| @Override | ||
| protected JsonObject createRequestBody(Document document) { | ||
| // Add the entity mentions to the request | ||
| String text = document.getText(); | ||
| JsonObject requestBody = super.createRequestBody(document); | ||
| JsonArray mentions = new JsonArray(); | ||
| int start; | ||
| int end; | ||
| for (Span span : document.getMarkings(Span.class)) { | ||
| start = span.getStartPosition(); | ||
| end = start + span.getLength(); | ||
| JsonObject mention = new JsonObject(); | ||
| mention.addProperty("start", start); | ||
| mention.addProperty("end", end); | ||
| mention.addProperty("surface_form", text.substring(start, end)); | ||
| mentions.add(mention); | ||
| } | ||
| requestBody.add("ent_mentions", mentions); | ||
| return requestBody; | ||
| } | ||
| } |
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src/main/java/org/aksw/gerbil/annotator/impl/neamt/NeamtEntityRecognizer.java
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| @@ -0,0 +1,21 @@ | ||
| package org.aksw.gerbil.annotator.impl.neamt; | ||
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| import java.util.List; | ||
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| import org.aksw.gerbil.annotator.EntityRecognizer; | ||
| import org.aksw.gerbil.exceptions.GerbilException; | ||
| import org.aksw.gerbil.transfer.nif.Document; | ||
| import org.aksw.gerbil.transfer.nif.Span; | ||
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| public class NeamtEntityRecognizer extends AbstractNeamtAnnotator implements EntityRecognizer { | ||
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| public NeamtEntityRecognizer(String serviceUrl, String components, String lang) { | ||
| super(serviceUrl, components, lang); | ||
| } | ||
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| @Override | ||
| public List<Span> performRecognition(Document document) throws GerbilException { | ||
| return request(document).getMarkings(Span.class); | ||
| } | ||
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| } |
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