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1.GRN_analysis-- scripts for gene regulatory network (GRN) analysis using SCENIC. -
2.Monocle_multiome-- scripts for running monocle analysis using multiome object. Note: we used ATAC assay as input for monocle2, and then use inferred pseudotime scores for the subsequent analysis. -
3.Monocle_results_plotting-- scripts for plotting monocle2 results for regulons and DEGs.
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