Calculate vaf for a list of variants (snv and indel) based on bam;
please follow work_log_gbm_rc to submit jobs on compute1
Tumor and normal bam (*bam) and index files (*bai) and vcf file which contains the following fields:
chr2 233464232 233464234 GCT -
chr2 233844246 233844246 G A
Song Cao, scao@wustl.edu