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  1. broadinstitute/viral-pipelines broadinstitute/viral-pipelines Public

    viral-ngs: complete pipelines

    WDL 60 28

  2. auspice-private-template auspice-private-template Public

    Template for spinning up an Auspice server with data sourced from a private github repo

    Dockerfile 2

  3. broadinstitute/viral-assemble broadinstitute/viral-assemble Public

    viral-ngs: genome assembly and scaffolding

    Python 7 2

  4. broadinstitute/viral-classify broadinstitute/viral-classify Public

    viral-ngs: taxonomic identification, classification, and filtering steps

    Python 1

  5. broadinstitute/viral-core broadinstitute/viral-core Public

    viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux

    Python 3

  6. broadinstitute/beast-beagle-cuda broadinstitute/beast-beagle-cuda Public

    BEAST+BEAGLE compiled with NVIDIA CUDA

    Shell 10 2