Catch extra exception #267
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| name: CI_WEIS | |
| # We run CI on push commits on all branches | |
| on: [push, pull_request] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build: | |
| name: Build (${{ matrix.os }} Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macOS-latest"] | |
| python-version: ["3.9","3.10","3.11"] | |
| steps: | |
| #- name: Setup GNU Fortran | |
| # # if: false == contains( matrix.os, 'windows') | |
| # uses: awvwgk/setup-fortran@main | |
| - uses: actions/checkout@v3 | |
| # This is the more official way to do miniconda, but it messes with the GitHub worker environment and shell quite a bit | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| # https://github.com/marketplace/actions/setup-miniconda | |
| with: | |
| #miniconda-version: "latest" | |
| #miniforge-version: "latest" | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| #auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| activate-environment: test | |
| auto-activate-base: false | |
| # Install dependencies of WISDEM specific to mac # libgcc openblas libopenblas | |
| - name: Add dependencies mac specific | |
| if: contains( matrix.os, 'mac') | |
| run: | | |
| mamba install -y petsc4py mpi4py openmpi compilers | |
| # Install dependencies of WISDEM specific to windows | |
| - name: Add dependencies windows specific | |
| if: contains( matrix.os, 'windows') | |
| run: | | |
| mamba install -y m2w64-toolchain libpython | |
| # Install dependencies of WEIS specific to ubuntu | |
| - name: Add dependencies ubuntu specific | |
| if: contains( matrix.os, 'ubuntu') | |
| # (if you use the shell here, cannot use 'compiler' package otherwise get link problems to system libraries | |
| # Mpi only seems to work with the shell command though, so instead rely on system compilers | |
| run: | | |
| mamba install -y petsc4py mpi4py openmpi | |
| python -c "import platform; print(platform.node())" | |
| - name: Show custom environment | |
| run: | | |
| mamba list | |
| printenv | sort | |
| # Debugging session | |
| #- name: Setup tmate session | |
| # if: contains( matrix.os, 'mac') | |
| # uses: mxschmitt/action-tmate@v3 | |
| # Install WEIS | |
| - name: Install WEIS | |
| run: | | |
| python setup.py develop | |
| # List the collected tests for debugging purposes | |
| - name: List tests | |
| run: | | |
| pytest weis --collect-only | |
| # Run all tests within WEIS, but not computationally expensive examples | |
| - name: Run tests within WEIS | |
| run: | | |
| pytest weis --cov-config=.coverageac --cov=weis | |
| # Run coveralls | |
| - name: Run coveralls | |
| if: contains( matrix.os, 'ubuntu') | |
| # This also works, https://github.com/AndreMiras/coveralls-python-action | |
| #uses: AndreMiras/coveralls-python-action@develop | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coveralls --service=github |