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cell2cell - v0.7.0 and v0.7.1

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@earmingol earmingol released this 19 Nov 22:39
· 43 commits to master since this release
7b00865

Please refer to the release notes of all previous versions here

New features

  • Added cell2cell.spatial functions for enabling analyses considering spatial organization in spatial data.
    These functions include:
    • Filtering by intercellular distances by thresholding values (cell2cell.spatial.distances and cell2cell.spatial.filtering).
    • Dividing the tissue in square grids (cell2cell.spatial.neighborhoods.create_spatial_grid())
    • Dividing the tissue in moving windows (cell2cell.spatial.neighborhoods.create_sliding_windows(), cell2cell.spatial.neighborhoods.calculate_window_size(),
      and cell2cell.spatial.neighborhoods.add_sliding_window_info_to_adata())

Feature updates

Fixed Bugs

  • Fixed bug that made to incorrectly visualize multiple legends in plots as for example in cell2cell.plotting.tensor_plot
    when using newer matplotlib versions.