cell2cell - v0.7.0 and v0.7.1
Please refer to the release notes of all previous versions here
New features
- Added
cell2cell.spatial
functions for enabling analyses considering spatial organization in spatial data.
These functions include:- Filtering by intercellular distances by thresholding values (
cell2cell.spatial.distances
andcell2cell.spatial.filtering
). - Dividing the tissue in square grids (
cell2cell.spatial.neighborhoods.create_spatial_grid()
) - Dividing the tissue in moving windows (
cell2cell.spatial.neighborhoods.create_sliding_windows()
,cell2cell.spatial.neighborhoods.calculate_window_size()
,
andcell2cell.spatial.neighborhoods.add_sliding_window_info_to_adata()
)
- Filtering by intercellular distances by thresholding values (
Feature updates
Fixed Bugs
- Fixed bug that made to incorrectly visualize multiple legends in plots as for example in
cell2cell.plotting.tensor_plot
when using newer matplotlib versions.