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rhdf5filters (R-bundle-Bioconductor-3.12-foss-2020b-R-4.0.3.eb) fails to install on aarch64 #12817

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branfosj opened this issue May 5, 2021 · 1 comment · Fixed by #12836
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@branfosj
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branfosj commented May 5, 2021

Installing extension rhdf5filters 1.2.0 (in R-bundle-Bioconductor-3.12-foss-2020b-R-4.0.3.eb) fails on aarch64 with the error:

configure: error: Need GCC to support X86 CPU features tests

Workaround is to use the following

    ('rhdf5filters', '1.2.0', {
        'checksums': ['58df019a2c8626cc236ebe19d44b830a6c3b5f787ea4090d5b57454a88d676cb'],
        'installopts': '--configure-args="ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no"',
    }),

but this will not be wanted on x86_64. Instead some patching of the configure file should be used.

(From a report on slack - I did not see this issue when installing on POWER.)

@boegel
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boegel commented May 10, 2021

It looks like this was fixed in a more recent version of rhdf5filters, see grimbough/rhdf5filters#6

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