{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 #12894

boegel · 2021-05-18T11:43:19Z

(created using eb --new-pr)
requires ~~#12796~~ (FastTree)

…GCC-10.2.0.eb, HMMER2-2.3.2-GCC-10.2.0.eb, MUSCLE-3.8.1551-GCC-10.2.0.eb and patches: antiSMASH-5.2.0_Biopython-1.78.patch

boegel · 2021-05-18T11:56:02Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
node3171.skitty.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/66ddb545b462084613824a870957185e for a full test report.

boegel · 2021-05-18T12:04:41Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
node3614.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/774d2cfb93bf744f3f6c2873d0d974be for a full test report.

boegel · 2021-05-18T12:36:50Z

@boegelbot please test @ generoso

boegelbot · 2021-05-18T12:40:12Z

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=12894 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_12894 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 17246

Test results coming soon (I hope)...

- notification for comment with ID 843134289 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-05-18T12:44:21Z

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/8f2ac9241de0d0452e91ccc86761d52a for a full test report.

…asyconfigs into 20210518134311_new_pr_antiSMASH520

verdurin · 2021-05-26T15:12:55Z

@boegel please look at the unit test complaint.

boegel · 2021-06-11T19:37:15Z

@verdurin done!

…asyconfigs into 20210518134311_new_pr_antiSMASH520

bedroge · 2021-12-24T09:53:24Z

@boegelbot please test @ generoso

bedroge · 2021-12-24T09:55:08Z

Test report by @bedroge
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.8.10
See https://gist.github.com/0007d48036dff6cc0e00f655198c1684 for a full test report.

boegelbot · 2021-12-24T09:55:10Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=12894 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_12894 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7581

Test results coming soon (I hope)...

- notification for comment with ID 1000760614 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2021-12-24T09:59:04Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/f47ecfda833400db910d737b065fedd2 for a full test report.

bedroge · 2021-12-24T10:09:55Z

@boegelbot please test @ generoso

boegelbot · 2021-12-24T10:10:10Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=12894 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_12894 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7582

Test results coming soon (I hope)...

- notification for comment with ID 1000768396 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

bedroge · 2021-12-24T10:11:37Z

Test report by @bedroge
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.8.10
See https://gist.github.com/732342aeb6497ba7cb1be25573a9b4df for a full test report.

boegelbot · 2021-12-24T10:13:49Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/d5d8058627f97fb9d43cc662e86ac7a0 for a full test report.

bedroge · 2021-12-24T10:23:53Z

@boegelbot please test @ generoso

boegel · 2021-12-24T10:25:02Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3163.skitty.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/5599f79a56d5e8c0df551ae637f79b2b for a full test report.

boegelbot · 2021-12-24T10:25:10Z

@bedroge: Request for testing this PR well received on login1

PR test command 'EB_PR=12894 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_12894 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 7583

Test results coming soon (I hope)...

- notification for comment with ID 1000774058 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

bedroge · 2021-12-24T10:25:24Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bob-Latitude-5300 - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8665U CPU @ 1.90GHz, Python 3.8.10
See https://gist.github.com/f232e47155747f79449146b38639487d for a full test report.

boegelbot · 2021-12-24T10:28:55Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux rocky linux 8.4, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/0c0676526cc927535836e4096161ee42 for a full test report.

bedroge · 2021-12-24T11:20:42Z

Test report by @bedroge
SUCCESS
Build succeeded for 3 out of 3 (1 easyconfigs in total)
pg-interactive.hpc.rug.nl - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 3.6.8
See https://gist.github.com/50d5b4b5555b24fe412b99abb2acdd79 for a full test report.

bedroge

lgtm

bedroge · 2021-12-24T11:22:04Z

Going in, thanks @boegel!

boegel · 2021-12-24T11:24:48Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3612.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/6cd47678d022f0d5af05278fc9482f2b for a full test report.

adding easyconfigs: antiSMASH-5.2.0-foss-2020b.eb, GlimmerHMM-3.0.4c-…

a02f0bd

…GCC-10.2.0.eb, HMMER2-2.3.2-GCC-10.2.0.eb, MUSCLE-3.8.1551-GCC-10.2.0.eb and patches: antiSMASH-5.2.0_Biopython-1.78.patch

boegel added the update label May 18, 2021

boegel added this to the 4.x milestone May 18, 2021

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Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

c3a2808

…asyconfigs into 20210518134311_new_pr_antiSMASH520

add commented out post-install commands to download antiSMASH databases

f0862d7

easybuilders deleted a comment from boegelbot Jun 7, 2021

bedroge added 2 commits December 24, 2021 10:44

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

6678e53

…asyconfigs into 20210518134311_new_pr_antiSMASH520

add simple sanity check command

4515a1c

use toolchain's default muscle version

e6951e3

boegel changed the title ~~{bio}[GCC/10.2.0] antiSMASH v5.2.0, GlimmerHMM v3.0.4c, HMMER2 v2.3.2, ... w/ Python 3.8.6~~ {bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0, MUSCLE v3.8.1551 w/ Python 3.8.6 Dec 24, 2021

remove unused MUSCLE easyconfig

8168d87

boegel changed the title ~~{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0, MUSCLE v3.8.1551 w/ Python 3.8.6~~ {bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 Dec 24, 2021

bedroge approved these changes Dec 24, 2021

View reviewed changes

bedroge merged commit 6739a5c into easybuilders:develop Dec 24, 2021

bedroge modified the milestones: 4.x, next release (4.5.2?) Dec 24, 2021

boegel deleted the 20210518134311_new_pr_antiSMASH520 branch December 24, 2021 12:53

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{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 #12894

{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 #12894

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{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 #12894

{bio}[GCC/10.2.0,foss/2020b] antiSMASH v5.2.0 w/ Python 3.8.6 #12894

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