{bio}[GCC/7.3.0-2.30] medaka v0.11.4 w/ Python 3.6.6 #9705
Merged
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(created using
eb --new-pr
)I'm forced to use an older toolchain here, since the latest version of medaka has some fairly strict version requirements, i.e.:
(see also How strict are the version requirements for dependencies? nanoporetech/medaka#124 and Support for python >=3.7 nanoporetech/medaka#123)
The test suite that is available in 'medata/test' in https://github.com/nanoporetech/medaka, which you can run with 'pytest medaka', passes fully (189 tests passed, no errors/failures).
I can't run the tests in the easyconfig though, since 'medaka/test' is not included in the release provided on PyPI, and using the sources straight from GitHub is not an option either since then the files in medaka/data are just stubs rather than the actual files (which are pulled in with git-lfs on 'git clone')... See also the discussion in nanoporetech/medaka#125.