This repository contains the notes and related information for the graduate section of the class that I teach with John Openshaw, Global Change and Emerging Infectious Disease (Earth Systems 214).
The notes for the class include (links to come)
- Introduction to
R - Epidemiological Data and Stats in
R - Notes on Basic Epidemiological Measures of Association
- Some Notes on R0
- Sensitivities of R0
- Estimating R0 from Case Data
- Numerical Integration of ODE Models
- The Consequences of Structure for Epidemic Models
- Notes on Time Series and Spectral Analysis
- Fitting Epidemic Models to Data (Part I)
In addition to the class notes, I will occasionally push notes of timely relevance for the subject infectious disease ecology here.