covid-19

data analysis and modeling of COVID-19

data sources

• global metrics from Johns Hopkins University https://github.com/CSSEGISandData/COVID-19
• US county-level metrics from The New York Times https://github.com/nytimes/covid-19-data
• Italy regione-level metrics from Dipartimento della Protezione Civile https://github.com/pcm-dpc/COVID-19

all data sources are timeseries with updated cumulative metrics for each day

metrics

• cum. cases, deaths, and recovered, for most regions
• timeseries from 2020-01-22 onwards, for most regions
• derived metrics include: case fatality rate, active cases, day-over-day diffs, day-over-day % change

examples

custom plots mixing any metrics for regions at multiple levels

how to clone/edit on a mac

1. have python 3 installed:
   1. brew install pyenv
   2. pyenv install 3.8.0
   3. pyenv local 3.8.0
2. install dependencies and run:
   1. install poetry
   2. poetry install
   3. poetry run jupyter notebook