NIfTI-Studio

A Matlab toolbox for NIfTI and Analyze (img/hdr) image visualization, editing, and 3D rendering

Cite:

Layden, E. A. (2020). NIfTI-Studio: a Matlab toolbox for NIfTI and Analyze image visualization, editing, and 3D rendering. Zenodo. http://doi.org/10.5281/zenodo.3725006

If you find NIfTI-Studio useful and would like to support its continued development, feel free to send a cup of coffee! :)

Installation / Startup

1. Clone or download the repository
2. Open Matlab and add the NIfTI-Studio directory to Matlab's path
3. Enter nifti_studio in the command-line and press enter, or right-click nifti_studio.m -> Run
4. Select a NIfTI (.nii, .nii.gz) or Analyze (.img) image to load using the NIfTI-Studio file browser

Usage

Github Wiki user manual coming soon!

Enhancements and bug reports

Please create an issue and mark with the appropriate tags. If an issue concerns the main toolbox (nifti_studio.m), the "Main" tag should be used. If an issue concerns the 3D module (nifti_studio_3D.m), the "3D" tag should be used. If the issue concerns the mosaic module (nifti_studio_mosaic.m, currently in Beta), the "Mosaic" tag should be used. Additionally, labels "bug" or "enhancement" should be added.

Examples

3D rendering of human MNI brain template with regions of interest (ROIs) and connections

Code: human_example.m

Overlay a statistical map as colors on ROIs

Code: human_example.m

Slice mosaic of human MNI brain template segmented grey matter (GM) with ROIs

Code: human_example.m

3D rendering of zebra finch brain template with ROIs and functional connectivity

Code: zebra_finch_example.m

Slice mosaic of zebra finch brain template with ROIs

Code: zebra_finch_example.m