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Added option: EMMObased = False in ontology.load() #262

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merged 12 commits into from
Oct 22, 2021
Merged

Added option: EMMObased = False in ontology.load() #262

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33fc1ce
Added option: EMMObased = False in ontology.load()
francescalb Oct 20, 2021
99862bf
Fixed flake8
francescalb Oct 21, 2021
3d341fa
Added loading of rdf-schema in test_load.py
francescalb Oct 21, 2021
a36ce6a
Added assertion test in test_load for non-emmobased ontology
francescalb Oct 21, 2021
6784682
Corrected assertion test comparing classes from rdf and rdfs in
francescalb Oct 21, 2021
ab3790b
Corrected assertion of rdf-schema entity in test_load
francescalb Oct 21, 2021
a466bae
Test loading rdf and rdfs
francescalb Oct 21, 2021
e4e4252
bla
francescalb Oct 21, 2021
897e12e
Update ontopy/ontology.py
francescalb Oct 21, 2021
5650063
Update ontopy/ontology.py
francescalb Oct 21, 2021
0fb2657
Changed back to EMMObased instead of EMMO_based
francescalb Oct 21, 2021
729f5a9
Moved test_rdfs function to test_load.py file
francescalb Oct 22, 2021
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5 changes: 3 additions & 2 deletions ontopy/ontology.py
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Original file line number Diff line number Diff line change
Expand Up @@ -285,7 +285,7 @@ def remove_label_annotation(self, iri):
def load(self, only_local=False, filename=None, format=None,
reload=None, reload_if_newer=False, url_from_catalog=None,
catalog_file='catalog-v001.xml', tmpdir=None,
**kwargs):
EMMObased=True,**kwargs):
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"""Load the ontology.

Parameters
Expand Down Expand Up @@ -329,7 +329,7 @@ def load(self, only_local=False, filename=None, format=None,
tmpdir=tmpdir, **kwargs)

# Enable optimised search by get_by_label()
if self._special_labels is None:
if self._special_labels is None and EMMObased == True:
for iri in DEFAULT_LABEL_ANNOTATIONS:
self.add_label_annotation(iri)
t = self.world['http://www.w3.org/2002/07/owl#topObjectProperty']
Expand All @@ -347,6 +347,7 @@ def load(self, only_local=False, filename=None, format=None,
def _load(self, only_local=False, filename=None, format=None,
reload=None, reload_if_newer=False, url_from_catalog=None,
catalog_file='catalog-v001.xml', tmpdir=None,
EMMObased=True,
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**kwargs):
"""Help function for _load()."""
web_protocol = 'http://', 'https://', 'ftp://'
Expand Down