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Bypass punning in ontodoc. #532

Merged
merged 16 commits into from
Feb 4, 2023
Merged

Bypass punning in ontodoc. #532

merged 16 commits into from
Feb 4, 2023

Commits on Feb 2, 2023

  1. Added warning that punned individuals are ignored in ontodoc.py. 

    Also added a test to check that ontodoc actually runs with non-punned individuals and punned individuals
    @francescalb
    francescalb committed Feb 2, 2023
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  2. Added prefLabel to individual in testonto_w_individual

    @francescalb
    francescalb committed Feb 2, 2023
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  3. Merge branch 'master' into flb/bypass_punning_in_ontodoc

    @francescalb
    francescalb committed Feb 2, 2023
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  4. Corrected test for ontodoc with punning

    @francescalb
    francescalb committed Feb 2, 2023
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  5. Merge branch 'flb/bypass_punning_in_ontodoc' of github.com:emmo-repo/… 

    …EMMOntoPy into flb/bypass_punning_in_ontodoc
    @francescalb
    francescalb committed Feb 2, 2023
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  6. Run only pytest CI (py3.7-8) on push

    @CasperWA
    CasperWA committed Feb 2, 2023
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  7. Define variable prior to try/finally

    @CasperWA
    CasperWA committed Feb 2, 2023
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  8. Tattle in conftest

    @CasperWA
    CasperWA committed Feb 2, 2023
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  9. Fix returning tuples from os.walk()

    @CasperWA
    CasperWA committed Feb 2, 2023
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  10. Changed to positive test for punning, instead of TypeError 

    Pushed with no verify as the pylint errors are due to pylint upgrade
which finds errors in other parts of the core. This is addressed in another PR.
    @francescalb
    francescalb committed Feb 2, 2023
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Commits on Feb 3, 2023

  1. Update fixtures for testing tools 

    Note, only the ontodoc tests have been updated, so all other tool tests
will fail.
    @CasperWA
    CasperWA committed Feb 3, 2023
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  2. Update tools tests with updated fixtures

    @CasperWA
    CasperWA committed Feb 3, 2023
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  3. Revert "Run only pytest CI (py3.7-8) on push" 

    This reverts commit a80a96e.
    @CasperWA
    CasperWA committed Feb 3, 2023
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Commits on Feb 4, 2023

  1. Merge pull request #536 from emmo-repo/cwa/test_flb/bypass_punning_in… 

    …_ontodoc

Fix fixtures for Python3.7.
    @francescalb
    francescalb committed Feb 4, 2023
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  2. Merge branch 'master' into flb/bypass_punning_in_ontodoc

    @francescalb
    francescalb committed Feb 4, 2023
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  3. pre-commit fix

    @francescalb
    francescalb committed Feb 4, 2023
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