more for doc

.github/workflows/doc.yml

@@ -53,13 +53,4 @@ jobs:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: sphinx/_build/html
 
-    - name: Commit updated documentation
-      run: |
-        cd ${GITHUB_WORKSPACE}
-        git config --global user.email "${GIT_USER_EMAIL}"
-        git config --global user.name "${GIT_USER_NAME}"
-        git config pull.rebase false
-        git add .
-        git commit --allow-empty -m "Automatic update of github pages"
-        git push origin master
 

sphinx/index.rst

@@ -4,7 +4,8 @@
 
    About <about>
    self
-   References <battery>
+   Class Index <battery>
+   Resources <resources>
    Contribute <contribute>
 
 
@@ -178,9 +179,9 @@ directly from the web. Commands for both options are given below:
 Contributing
 ------------
 
-We welcome contributions from the community to enhance and expand the
-ontology. If you have suggestions, improvements, or additional chemical
-substance information to contribute, please refer to our :ref:`contributing guidelins<contribute:Contributing to the ontology>`.
+We welcome contributions from the community to enhance and expand the ontology. If you have suggestions, improvements,
+or additional chemical substance information to contribute, please refer to our :ref:`contributing
+guidelins<contribute:Contributing to the ontology>`.
 
 Acknowledgements
 ~~~~~~~~~~~~~~~~

sphinx/resources.rst

@@ -0,0 +1,19 @@
+Resources
+=========
+
+Best Practices
+--------------
+- `Data on the Web Best Practices <https://www.w3.org/TR/dwbp/>`_
+- `Best Practices for Publishing Linked Data <https://www.w3.org/TR/ld-bp/>`_
+
+Tabular Data
+------------
+- `Model for Tabular Data and Metadata on the Web <https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/>`_
+- `Metadata Vocabulary for Tabular Data <https://www.w3.org/TR/2015/REC-tabular-metadata-20151217/>`_
+
+RDF Vocabularies
+----------------
+- `RDF Schema <https://www.w3.org/TR/rdf-schema/>`_
+- `Simple Knowledge Organization System (SKOS) <https://www.w3.org/2004/02/skos/>`_
+- `Dublin Core <https://www.dublincore.org/specifications/dublin-core/dcmi-terms/>`_
+- `Schema.org <https://schema.org/>`_

sphinx/ttl_to_rst.py

@@ -23,12 +23,13 @@ def extract_terms_info_sparql(g: Graph)-> list:
     PREFIXES = """
         PREFIX emmo: <http://emmo.info/emmo#>
         PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
+        PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
         """
 
-    list_entity_types = ["IRI", "prefLabel", "Elucidation", "Alternative Label(s)", "IEC Reference", "IUPAC Reference", "Wikipedia Reference"]
+    list_entity_types = ["IRI", "prefLabel", "Elucidation", "Alternative Label(s)", "IEC Reference", "IUPAC Reference", "Wikipedia Reference", "Wikidata Reference", "Comment", ]
 
     query =  PREFIXES  + """
-        SELECT ?iri ?prefLabel ?elucidation (GROUP_CONCAT(?altLabel; SEPARATOR=", ") AS ?altLabels) ?iecref ?iupacref ?wikipediaref
+        SELECT ?iri ?prefLabel ?elucidation (GROUP_CONCAT(?altLabel; SEPARATOR=", ") AS ?altLabels) ?iecref ?iupacref ?wikipediaref ?wikidataref ?comment
         WHERE {
             ?iri skos:prefLabel ?prefLabel.
 
@@ -37,6 +38,8 @@ def extract_terms_info_sparql(g: Graph)-> list:
             OPTIONAL { ?iri emmo:EMMO_50c298c2_55a2_4068_b3ac_4e948c33181f ?iecref . }
             OPTIONAL { ?iri emmo:EMMO_fe015383_afb3_44a6_ae86_043628697aa2 ?iupacref . }
             OPTIONAL { ?iri emmo:EMMO_c84c6752_6d64_48cc_9500_e54a3c34898d ?wikipediaref . }
+            OPTIONAL { ?iri emmo:EMMO_26bf1bef_d192_4da6_b0eb_d2209698fb54 ?wikidataref . }
+            OPTIONAL { ?iri rdfs:comment ?comment . }
         }
 
         GROUP BY ?iri ?prefLabel ?elucidation
@@ -62,9 +65,9 @@ def extract_terms_info_sparql(g: Graph)-> list:
 def render_rst_top() -> str:
 
     top_rst = """
-==========
-References
-==========
+===========
+Class Index
+===========
 
 """