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fix: Ease clap2->clap3 migration with deprecations
- `App::with_defaults` was not included since that has been deprecated since 2.14 - `App::args_from_usage` does not have a close enough parallel in the new API, as far as I could tell - `ArgMatches::usage` cannot have a thin wrapper around `App::generate_usage`. - `App::write_*`: getting lazy, didn't seem like high value functions - Any `Settings` (some things need to be figured out here) This is a part of clap-rs#2617
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