#2336 - Ribose sugar doesn't allow to load IDT custom mixed bases (#…

…2342)
epam · Sep 10, 2024 · 78dfe63 · 78dfe63
1 parent f35fe56
commit 78dfe63
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Showing 7 changed files with 1,123 additions and 3 deletions.
diff --git a/api/tests/integration/ref/formats/idt_to_ket.py.out b/api/tests/integration/ref/formats/idt_to_ket.py.out
@@ -22,6 +22,7 @@ idt_mixed_std.ket:SUCCEED
 idt_mod_phosphates.ket:SUCCEED
 idt_modifications.ket:SUCCEED
 idt_prefix_suffix.ket:SUCCEED
+idt_rna_dna_mixed_custom.ket:SUCCEED
 idt_single_nucleoside.ket:SUCCEED
 idt_std_phosphates.ket:SUCCEED
 idt_t_i2moera.ket:SUCCEED
@@ -46,5 +47,6 @@ Test 'Ar/3Phos/': got expected error 'Sugar prefix could not be used with modifi
 Test 'T/52MOErA/': got expected error 'IDT alias '52MOErA' cannot be used at three prime end.'
 Test 'T/5Phos/': got expected error 'IDT alias '5Phos' cannot be used at three prime end.'
 Test 'm/5Phos/A': got expected error 'Sugar prefix could not be used with modified monomer.'
+Test 'r(B1:50003000)(B1)': got expected error 'Unknown mixed base 'B1''
 Test 'r+A': got expected error 'Sugar prefix 'r' whithout base.'
 Test 'r/5Phos/A': got expected error 'Sugar prefix could not be used with modified monomer.'
diff --git a/api/tests/integration/ref/formats/ket_to_idt.py.out b/api/tests/integration/ref/formats/ket_to_idt.py.out
@@ -23,6 +23,7 @@ idt_mod_phosphates.ket:SUCCEED
 idt_modifications.ket:SUCCEED
 idt_more_than_80_chars.ket:SUCCEED
 idt_prefix_suffix.ket:SUCCEED
+idt_rna_dna_mixed_custom.ket:SUCCEED
 idt_single_nucleoside.ket:SUCCEED
 idt_std_phosphates.ket:SUCCEED
 idt_t_i2moera.ket:SUCCEED

diff --git a/api/tests/integration/tests/formats/idt_to_ket.py b/api/tests/integration/tests/formats/idt_to_ket.py
@@ -58,6 +58,7 @@ def find_diff(a, b):
     "idt_unsplit": "/5UNSPLIT//iUNSPLIT//3UNSPLIT/",
     "idt_mixed_std": "ARAS",
     "idt_mixed_custom": "(N1:10203050)(N1)N",
+    "idt_rna_dna_mixed_custom": "r(R1:50003000)(R1)",
 }
 
 lib = indigo.loadMonomerLibraryFromFile(
@@ -99,6 +100,7 @@ def find_diff(a, b):
     "/52MOErA/*/3Phos/": "Symbol '*' could be placed only between two nucleotides/nucleosides.",
     "/52MOErA//32MOErA/*": "Monomer /32MOErA/ doesn't have phosphate, so '*' couldn't be applied.",
     "/3Phos/*": "Symbol '*' could be placed only between two nucleotides/nucleosides.",
+    "r(B1:50003000)(B1)": "Unknown mixed base 'B1'",
 }
 for idt_seq in sorted(idt_errors.keys()):
     error = idt_errors[idt_seq]

diff --git a/api/tests/integration/tests/formats/ket_to_idt.py b/api/tests/integration/tests/formats/ket_to_idt.py
@@ -63,6 +63,7 @@ def find_diff(a, b):
     "idt_more_than_80_chars": "/52MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//i2MOErA//3Phos/",
     "idt_mixed_std": "ARAS",
     "idt_mixed_custom": "(N1:10203050)(N1)N",
+    "idt_rna_dna_mixed_custom": "r(R1:50003000)(R1)",
 }
 
 for filename in sorted(idt_data.keys()):