Backmerge: #2303 - Import of variant monomers from Sequence doesn't w…

…ork for RNA and FASTA for RNA/DNA (#2393)
epam · Sep 17, 2024 · 956c763 · 956c763
1 parent 2772c0c
commit 956c763
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Showing 6 changed files with 330 additions and 237 deletions.
diff --git a/api/tests/integration/tests/formats/ket_to_helm.py b/api/tests/integration/tests/formats/ket_to_helm.py
@@ -46,7 +46,7 @@ def find_diff(a, b):
     "helm_mixed_custom": "RNA1{[dR](A:10+[Xan]:20+G:30+T:50)P.[dR](A:10+C:20+G:30+T:50)P.[dR](A+C+G+T)}$$$$V2.0",
     "helm_aminoacids_variants": "PEPTIDE1{([Dha]+N).(L+I).(E+Q).(A+C+D+E+F+G+H+I+K+L+M+N+O+P+Q+R+S+T+U+V+W+Y)}$$$$V2.0",
     "dna_variants": "RNA1{[dR](C,G,T)P.[dR](A,C,G,T)}$$$$V2.0",
-    "rna_variants": "RNA1{R(G,T)P.R(A,C,G,T)}$$$$V2.0",
+    "rna_variants": "RNA1{R(A,G)P.R(G,T)P.R(A,C,G,T)}$$$$V2.0",
     "helm_monomer_molecule": "PEPTIDE1{A}|PEPTIDE2{G}|CHEM1{[C(N[*:2])=C[*:1] |$;;_R2;;_R1$|]}$CHEM1,PEPTIDE1,1:R2-1:R1|PEPTIDE2,CHEM1,1:R2-1:R1$$$V2.0",
 }
 

diff --git a/api/tests/integration/tests/formats/molecules/rna_variants.fasta b/api/tests/integration/tests/formats/molecules/rna_variants.fasta
@@ -1,2 +1,2 @@
 >Sequence1
-KN
+RKN