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27 Open 89 Closed
27 Open 89 Closed
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Issues list

Empty TPM counts for transcripts, even when raw counts are present question Further information is requested
#124 opened Oct 14, 2024 by Jonas-B-Frank
1
deAnalysis requires sample_id in sample_sheet - How to restart the run?
#123 opened Oct 11, 2024 by KatrinMoller
2
wf transcriptome differential analysis error in dmDSdata(counts = counts, samples = coldata)
#122 opened Oct 8, 2024 by kjb141
4
ERROR ~ Error executing process > 'pipeline:reference_assembly:map_reads (1)' question Further information is requested
#121 opened Sep 30, 2024 by physnano
3
If providing a samplesheet check it matches the files (.bam or .fastq) the pipeline recognises at launch.
#120 opened Sep 29, 2024 by fgponce
1
Process pipeline:differential_expression:count_transcripts (1) terminated with an error exit status (1) question Further information is requested
#119 opened Sep 27, 2024 by BenjaminBajzelj
1
ERROR ~ Error executing process > pipeline:differential_expression:map_transcriptome (4) terminated with an error exit status (137) question Further information is requested
#118 opened Sep 26, 2024 by RPdavies
5
Error executing process > 'pipeline:makeReport (1) error exit status (137) question Further information is requested
#116 opened Sep 25, 2024 by afazhra
1
Unique Molecular Identiifiers in the SQK-PCB114.24 kit question Further information is requested
#114 opened Sep 13, 2024 by calcutt
2
input_reads vs full_len_reads in differential_expression() question Further information is requested
#112 opened Aug 16, 2024 by mehc555
1
ERROR ~ Error executing process > 'pipeline:preprocess_ref_annotation' question Further information is requested
#111 opened Aug 9, 2024 by amir-tagh
7
Error in dmDSdata(counts = counts, samples = coldata)
#108 opened Jul 29, 2024 by Riczury
14
Failure to fetch Singularity image
#106 opened Jul 19, 2024 by jainronit
11
makeReport issue, docker container crash
#105 opened Jul 19, 2024 by jh4yd
7
markReport out of memory
#104 opened Jul 17, 2024 by jh4yd
4
bpipe error
#102 opened Jul 16, 2024 by ljmorris
5
Specifying minimap2 parameters question Further information is requested
#101 opened Jul 16, 2024 by lilif99
3
Genome annotation (gtf/gff3) from GenCode or Encode? question Further information is requested
#100 opened Jul 5, 2024 by LarionovBioinformatics
1
What to do with the generated data question Further information is requested
#97 opened Jun 26, 2024 by CamillePhilippeSCI
3
de_analysis.R: Creating counts dataframe changes counts variable from matrix to 'named' integer
#95 opened Jun 21, 2024 by damioresegun
8
More than 2 conditions in the sample sheet question Further information is requested
#94 opened Jun 12, 2024 by CWYuan08
6
main.nf error
#91 opened May 22, 2024 by shelgueta
3
Incompatability with nextflow version 24.04.01?
#90 opened May 22, 2024 by Brynjar-H
6
Output DGE analysis files omit gene names question Further information is requested
#86 opened Apr 17, 2024 by sydjo07
6
Error executing process > 'pipeline:differential_expression:build_minimap_index_transcriptome'
#82 opened Apr 4, 2024 by kamegh
21
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