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Add support for missing NAs in estimate_infection() model #528

Merged
merged 18 commits into from
Jan 9, 2024
Merged

Add support for missing NAs in estimate_infection() model #528

merged 18 commits into from
Jan 9, 2024

Commits on Jan 8, 2024

  1. add a lookup to estimate_infections

    @seabbs
    seabbs committed Jan 8, 2024
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  2. add R side support

    @seabbs
    seabbs committed Jan 8, 2024
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  3. don't internally impute missing as zero

    @seabbs
    seabbs committed Jan 8, 2024
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  4. update news

    @seabbs
    seabbs committed Jan 8, 2024
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  5. fix data preprocessing order

    @seabbs
    seabbs committed Jan 8, 2024
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  6. correction data ingestion

    @seabbs
    seabbs committed Jan 8, 2024
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  7. clean up filtering of leading zeros

    @seabbs
    seabbs committed Jan 8, 2024
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  8. error check create_clean_reported_cases and add unit tests to cover f… 

    …unction
    @seabbs
    seabbs committed Jan 8, 2024
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  9. correct handling of missing data in data preprocessing:

    @seabbs
    seabbs committed Jan 8, 2024
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  10. refine data preprocessing

    @seabbs
    seabbs committed Jan 8, 2024
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  11. update news and tests

    @seabbs
    seabbs committed Jan 8, 2024
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  12. update global variables

    @seabbs
    seabbs committed Jan 8, 2024
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  13. Update NEWS.md 

    Co-authored-by: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
    @seabbs @sbfnk
    seabbs and sbfnk committed Jan 8, 2024
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  14. Update R/create.R 

    Co-authored-by: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
    @seabbs @sbfnk
    seabbs and sbfnk committed Jan 8, 2024
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  15. Update R/create.R 

    Co-authored-by: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
    @seabbs @sbfnk
    seabbs and sbfnk committed Jan 8, 2024
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  16. Update R/create.R 

    Co-authored-by: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
    @seabbs @sbfnk
    seabbs and sbfnk committed Jan 8, 2024
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  17. fix line length linting

    @seabbs
    seabbs authored Jan 8, 2024
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  18. Document

    @actions-user
    actions-user committed Jan 8, 2024
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